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In this work, we propose trait-based merge trees a generalization of merge trees to feature level sets, targeting the analysis of tensor field or general multi-variate data. For this, we employ the notion of traits defined in attribute…

Machine Learning · Computer Science 2023-08-21 Jochen Jankowai , Talha Bin Masood , Ingrid Hotz

We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network, which are representative of critical…

Statistical Mechanics · Physics 2009-11-10 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

The evolutionary relationships among organisms have traditionally been represented using rooted phylogenetic trees. However, due to reticulate processes such as hybridization or lateral gene transfer, evolution cannot always be adequately…

Populations and Evolution · Quantitative Biology 2022-01-20 Sungsik Kong , Joan Carles Pons , Laura Kubatko , Kristina Wicke

Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…

Combinatorics · Mathematics 2019-10-21 Katharina T. Huber , Guillaume E. Scholz

In this paper, we provide a statistical analysis of high-resolution contact pattern data within primary and secondary schools as collected by the SocioPatterns collaboration. Students are graphically represented as nodes in a temporally…

Physics and Society · Physics 2023-07-19 Stephen Ashton , Enrico Scalas , Nicos Georgiou , István Zoltán Kiss

Humans communicate, receive, and store information using sequences of items -- from words in a sentence or notes in music to abstract concepts in lectures and books. The networks formed by these items (nodes) and the sequential transitions…

Physics and Society · Physics 2022-06-08 Christopher W. Lynn , Danielle S. Bassett

The brain can be regarded as a network: a connected system where nodes, or units, represent different specialized regions and links, or connections, represent communication pathways. From a functional perspective communication is coded by…

Neurons and Cognition · Quantitative Biology 2014-09-10 Fabrizio De Vico Fallani , Jonas Richiardi , Mario Chavez , Sophie Achard

Networks describe a variety of interacting complex systems in social science, biology and information technology. Usually the nodes of real networks are identified not only by their connections but also by some other characteristics.…

Physics and Society · Physics 2015-05-13 Ginestra Bianconi , Paolo Pin , Matteo Marsili

We study inferring a tree-structured representation from a single image for object shading. Prior work typically uses the parametric or measured representation to model shading, which is neither interpretable nor easily editable. We propose…

Computer Vision and Pattern Recognition · Computer Science 2023-09-14 Chen Geng , Hong-Xing Yu , Sharon Zhang , Maneesh Agrawala , Jiajun Wu

Networks are a powerful tool to model the structure and dynamics of complex systems across scales. Direct connections between system components are often represented as edges, while paths and walks capture indirect interactions. This…

Physics and Society · Physics 2025-01-15 Rohit Sahasrabuddhe , Renaud Lambiotte , Martin Rosvall

Multivariate graphs are prolific across many fields, including transportation and neuroscience. A key task in graph analysis is the exploration of connectivity, to, for example, analyze how signals flow through neurons, or to explore how…

A deluge of new data on social, technological and biological networked systems suggests that a large number of interactions among system units are not limited to pairs, but rather involve a higher number of nodes. To properly encode such…

Physics and Society · Physics 2023-11-08 Quintino Francesco Lotito , Federico Musciotto , Alberto Montresor , Federico Battiston

Many real-world networks are globally sparse but locally dense. Typical examples are social networks, biological networks, and information networks. This double structural nature makes it difficult to adopt a homogeneous visualization model…

Human-Computer Interaction · Computer Science 2019-08-23 Lorenzo Angori , Walter Didimo , Fabrizio Montecchiani , Daniele Pagliuca , Alessandra Tappini

We are offering a particular interpretation (well within the range of experimentally and theoretically accepted notions) of neural connectivity and dynamics and discuss it as the data-and-process architecture of the visual system. In this…

Neurons and Cognition · Quantitative Biology 2014-07-08 Christoph von der Malsburg

Complex networks contain various interactions among similar or different entities. These kinds of networks are called multi-relational networks, in which each layer corresponds to a special type of interaction. Multi-relational networks are…

Social and Information Networks · Computer Science 2021-04-02 Zahra Roozbahani , Hanif Emamgholizadeh , Jalal Rezaeenour , Mahshid Hajialikhani

Given a graph or a matroid, a tree of tangles is a tree decomposition that displays the structure of the connectivity: every edge of the decomposition tree induces a separation, that is, a way to divide the graph or matroid into two parts;…

Combinatorics · Mathematics 2023-02-06 Ann-Kathrin Elm

Human communication is often executed in the form of a narrative, an account of connected events composed of characters, actions, and settings. A coherent narrative structure is therefore a requisite for a well-formulated narrative -- be it…

Computation and Language · Computer Science 2020-03-02 Semi Min , Juyong Park

Geometric trees are characterized by their tree-structured layout and spatially constrained nodes and edges, which significantly impacts their topological attributes. This inherent hierarchical structure plays a crucial role in domains such…

Machine Learning · Computer Science 2024-08-19 Zheng Zhang , Allen Zhang , Ruth Nelson , Giorgio Ascoli , Liang Zhao

This paper presents findings from a study of the email network of a large scientific research organization, focusing on methods for visualizing and modeling organizational hierarchies within large, complex network datasets. In the first…

Social and Information Networks · Computer Science 2014-11-18 Benjamin H. Sims , Nikolai Sinitsyn , Stephan J. Eidenbenz

The analysis of complex and time-evolving interactions like social dynamics represents a current challenge for the science of complex systems. Temporal networks stand as a suitable tool to schematise such systems, encoding all the appearing…

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