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Plant parasitic nematodes cause damage to crop plants on a global scale. Robust detection on image data is a prerequisite for monitoring such nematodes, as well as for many biological studies involving the nematode C. elegans, a common…

Computer Vision and Pattern Recognition · Computer Science 2020-04-22 Long Chen , Martin Strauch , Matthias Daub , Xiaochen Jiang , Marcus Jansen , Hans-Georg Luigs , Susanne Schultz-Kuhlmann , Stefan Krüssel , Dorif Merhof

Drawing inspiration from animal navigation strategies, we introduce a novel computational model for navigation and mapping, rooted in biologically inspired principles. Animals exhibit remarkable navigation abilities by efficiently using…

Artificial Intelligence · Computer Science 2025-01-07 Daria de Tinguy , Tim Verbelen , Bart Dhoedt

Graph spectral analysis can yield meaningful embeddings of graphs by providing insight into distributed features not directly accessible in nodal domain. Recent efforts in graph signal processing have proposed new decompositions-e.g., based…

Machine Learning · Computer Science 2019-03-07 Miljan Petrović , Thomas A. W. Bolton , Maria Giulia Preti , Raphaël Liégeois , Dimitri Van De Ville

It is true that the "best" neural network is not necessarily the one with the most "brain-like" behavior. Understanding biological intelligence, however, is a fundamental goal for several distinct disciplines. Translating our understanding…

Neurons and Cognition · Quantitative Biology 2018-07-09 Guangzhi Tang , Konstantinos P. Michmizos

Spintronic devices offer a promising avenue for the development of nanoscale, energy-efficient artificial neurons for neuromorphic computing. It has previously been shown that with antiferromagnetic (AFM) oscillators, ultra-fast spiking…

Neural and Evolutionary Computing · Computer Science 2024-07-31 Hannah Bradley , Steven Louis , Andrei Slavin , Vasyl Tyberkevych

Rapid advances in genetics, genomics, and imaging have given insight into the molecular and cellular basis of behaviour in a variety of model organisms with unprecedented detail and scope. It is increasingly routine to isolate behavioural…

Quantitative Methods · Quantitative Biology 2013-01-08 André E. X. Brown , William R. Schafer

Neuromorphic computing and spiking neural networks (SNN) mimic the behavior of biological systems and have drawn interest for their potential to perform cognitive tasks with high energy efficiency. However, some factors such as temporal…

Hardware Architecture · Computer Science 2021-05-10 Haowen Fang , Brady Taylor , Ziru Li , Zaidao Mei , Hai Li , Qinru Qiu

A major challenge in analyzing animal behavior is to discover some underlying simplicity in complex motor actions. Here we show that the space of shapes adopted by the nematode C. elegans is surprisingly low dimensional, with just four…

Other Quantitative Biology · Quantitative Biology 2016-01-05 Greg J Stephens , Bethany Johnson-Kerner , William Bialek , William S Ryu

Recordings of whole brain activity with single neuron resolution are now feasible in simple organisms. Yet, it is still challenging to appropriately simplify such complex, noisy, and multivariate data in order to reveal general principles…

Neurons and Cognition · Quantitative Biology 2017-11-27 Connor Brennan , Alex Proekt

The neural connectome of the nematode Caenorhabditis elegans has been completely mapped, yet in spite of being one of the smallest connectomes (302 neurons), the design principles that explain how the connectome structure determines its…

Disordered Systems and Neural Networks · Physics 2020-01-08 Flaviano Morone , Hernan A. Makse

Bees display the remarkable ability to return home in a straight line after meandering excursions to their environment. Neurobiological imaging studies have revealed that this capability emerges from a path integration mechanism implemented…

Magnetic skyrmion technology is promising for the next-generation spintronics-based memory and neuromorphic computing due to their small size, non-volatility and low depinning current density. However, the Magnus force originating from the…

Mesoscale and Nanoscale Physics · Physics 2023-02-27 Debasis Das , Yunuo Cen , Jianze Wang , Xuanyao Fong

The current neuron reconstruction pipeline for electron microscopy (EM) data usually includes automatic image segmentation followed by extensive human expert proofreading. In this work, we aim to reduce human workload by predicting…

Computer Vision and Pattern Recognition · Computer Science 2024-01-09 Qihua Chen , Xuejin Chen , Chenxuan Wang , Yixiong Liu , Zhiwei Xiong , Feng Wu

In the study of biological networks, one of the major challenges is to understand the relationships between network structure and dynamics. In this paper, we model in vitro cortical neuronal cultures as stochastic dynamical systems and…

Neurons and Cognition · Quantitative Biology 2022-05-04 Chumin Sun , K. C. Lin , C. Y. Yeung , Emily S. C. Ching , Yu-Ting Huang , Pik-Yin Lai , C. K. Chan

We present an automated method to track and identify neurons in C. elegans, called "fast Deep Learning Correspondence" or fDLC, based on the transformer network architecture. The model is trained once on empirically derived synthetic data…

Quantitative Methods · Quantitative Biology 2021-07-16 Xinwei Yu , Matthew S. Creamer , Francesco Randi , Anuj K. Sharma , Scott W. Linderman , Andrew M. Leifer

We exploit flow propagation on the directed neuronal network of the nematode Caenorhabditis elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which…

Neurons and Cognition · Quantitative Biology 2016-08-09 Karol A. Bacik , Michael T. Schaub , Mariano Beguerisse-Díaz , Yazan N. Billeh , Mauricio Barahona

Autonomous driving perception demands accurate and efficient processing of three-dimensional sensor data under strict power constraints. Traditional convolutional neural networks achieve strong detection accuracy but are computationally…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Sambit Mohapatra , Senthil Yogamani , Heinrich Gotzig , Patrick Mader

Sensory receptor neurons match their dynamic range to ecologically relevant stimulus intensities. How this tuning is achieved is poorly understood in most receptors. We show that in the C. elegans URX O2 sensing neurons two putative…

Neurons and Cognition · Quantitative Biology 2022-10-12 Shigekazu Oda , Yu Toyoshima , Mario de Bono

Neuronal networks provide living organisms with the ability to process information. They are also characterized by abundant recurrent connections, which give rise to strong feedback that dictates their dynamics and endows them with fading…

Neurons and Cognition · Quantitative Biology 2020-06-24 Miguel A. Casal , Santiago Galella , Oscar Vilarroya , Jordi Garcia-Ojalvo

Spiking neural networks (SNN) distinguish themselves from artificial neural networks (ANN) because of their inherent temporal processing and spike-based computations, enabling a power-efficient implementation in neuromorphic hardware. In…

Neural and Evolutionary Computing · Computer Science 2023-11-29 Lucas Deckers , Laurens Van Damme , Ing Jyh Tsang , Werner Van Leekwijck , Steven Latré
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