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Membrane particles such as proteins and lipids organize into zones that perform unique functions. Here, I introduce a topological and category-theoretic framework to represent particle and zone intra-scale interactions and inter-scale…

Molecular Networks · Quantitative Biology 2026-01-01 Troy A. Kervin

A new family of combined subdivision schemes with one tension parameter is proposed by the interpolatory and approximating subdivision schemes. The displacement vectors between the points of interpolatory and approximating subdivision…

Numerical Analysis · Mathematics 2019-04-30 Rabia Hameed

We propose an algorithm for molecular dynamics or Monte Carlo simulations that uses an interpolation procedure to estimate potential energy values from energies and gradients evaluated previously at points of a simplicial mesh. We chose an…

Computational Physics · Physics 2020-01-07 Konstantin Karandashev , Jiri Vanicek

This paper presents a new methodology for clustering multivariate time series leveraging optimal transport between copulas. Copulas are used to encode both (i) intra-dependence of a multivariate time series, and (ii) inter-dependence…

Machine Learning · Computer Science 2016-01-12 Gautier Marti , Frank Nielsen , Philippe Donnat

Two numerical methods are proposed for detection of coupling between multiple time series generated by deterministic nonlinear systems. The first detects interdependence or the existence of coupling between time series. The second…

Chaotic Dynamics · Physics 2025-05-07 Timothy Sauer , George Sugihara

The capability to incorporate moving geometric features within models for complex simulations is a common requirement in many fields. Fluid mechanics within aeronautical applications, for example, routinely feature rotating (e.g. turbines,…

Numerical Analysis · Mathematics 2021-04-27 Edward Laughton , Gavin Tabor , David Moxey

The four-dimensional nonlinear model is extended to include the inter-channel stimulated Raman scattering, enabling accurate prediction of dual-polarization four-dimensional modulation formats and probabilistically shaped constellations in…

Signal Processing · Electrical Eng. & Systems 2025-09-15 Zhiwei Liang , Bin Chen , Jiwei Xu , Yi Lei , Qingqing Hu , Fan Zhang , Gabriele Liga

Atomistic-continuum multiscale modelling is becoming an increasingly popular tool for simulating the behaviour of materials due to its computational efficiency and reliable accuracy. In the case of ferromagnetic materials, the atomistic…

Computational Physics · Physics 2019-02-01 Doghonay Arjmand , Mikhail Poluektov , Gunilla Kreiss

This paper revisits building machine learning algorithms that involve interactions between entities, such as those between financial assets in an actively managed portfolio, or interactions between users in a social network. Our goal is to…

Machine Learning · Computer Science 2022-12-05 Qiong Wu , Jian Li , Zhenming Liu , Yanhua Li , Mihai Cucuringu

Ordinary differential equation models are nowadays widely used for the mechanistic description of biological processes and their temporal evolution. These models typically have many unknown and non-measurable parameters, which have to be…

Quantitative Methods · Quantitative Biology 2021-05-27 Alejandro F. Villaverde , Dilan Pathirana , Fabian Fröhlich , Jan Hasenauer , Julio R. Banga

We develop an interpolation-based modeling framework for parameter-dependent partial differential equations arising in control, inverse problems, and uncertainty quantification. The solution is discretized in the physical domain using…

Numerical Analysis · Mathematics 2026-04-20 Erik Burman , Mats G. Larson , Karl Larsson , Jonatan Vallin

Particle filters provide Monte Carlo approximations of intractable quantities such as point-wise evaluations of the likelihood in state space models. In many scenarios, the interest lies in the comparison of these quantities as some…

Methodology · Statistics 2016-07-19 Pierre E. Jacob , Fredrik Lindsten , Thomas B. Schön

In the present work, we consider multi-scale computation and convergence for nonlinear time-dependent thermo-mechanical equations of inhomogeneous shells possessing temperature-dependent material properties and orthogonal periodic…

Numerical Analysis · Mathematics 2023-08-23 Hao Dong , Xiaofei Guan , Yufeng Nie

It is crucially important to estimate unknown parameters in earth system models by integrating observation and numerical simulation. For many applications in earth system sciences, an optimization method which allows parameters to…

Geophysics · Physics 2022-07-13 Yohei Sawada

The ability to understand and solve high-dimensional inference problems is essential for modern data science. This article examines high-dimensional inference problems through the lens of information theory and focuses on the standard…

Information Theory · Computer Science 2019-07-05 Galen Reeves , Henry Pfister

The multipole expansion is a key tool in the study of light-matter interactions. All the information about the radiation of and coupling to electromagnetic fields of a given charge-density distribution is condensed into few numbers: The…

Optics · Physics 2018-05-08 R. Alaee , C. Rockstuhl , I. Fernandez-Corbaton

We introduce a new nonlinear model for classification, in which we model the joint distribution of response variable, y, and covariates, x, non-parametrically using Dirichlet process mixtures. We keep the relationship between y and x linear…

Statistics Theory · Mathematics 2007-05-23 Babak Shahbaba , Radford M. Neal

Interpolation methods for nonlinear finite element discretizations are commonly used to eliminate the computational costs associated with the repeated assembly of the nonlinear systems. While the group finite element formulation…

Numerical Analysis · Mathematics 2020-09-24 Kevin Tolle , Nicole Marheineke

In this paper, I outline several conceptual and methodological issues related to modeling individual and group processes embedded in clustered/hierarchical data structures. We position multilevel modeling techniques within a broader set of…

Methodology · Statistics 2022-12-29 Amira Ibrahim El-Desokey

Colloquially speaking, image generation models based upon diffusion processes are frequently said to exhibit "hallucinations," samples that could never occur in the training data. But where do such hallucinations come from? In this paper,…

Machine Learning · Computer Science 2024-08-27 Sumukh K Aithal , Pratyush Maini , Zachary C. Lipton , J. Zico Kolter