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The most general exclusion single species reaction-diffusion models with nearest-neighbor interactions one a one dimensional lattice are investigated, for which the evolution of full intervals are closed. Using a generating function method,…

Statistical Mechanics · Physics 2012-08-09 Amir Aghamohammadi , Mohammad Khorrami

We use the Self Consisten Generalized Langevin Equation theory (SCGLE) to study the dynamic arrest transitions of a system of three species of hard sphere colloidal system in the size ratio 1:3:9. We find that the inclusion of the smallest…

Reaction-diffusion models are used to describe systems in fields as diverse as physics, chemistry, ecology and biology. The fundamental quantities in such models are individual entities such as atoms and molecules, bacteria, cells or…

Computational Physics · Physics 2016-03-02 Fabian Spill , Pilar Guerrero , Tomas Alarcon , Philip K. Maini , Helen Byrne

Molecular dynamics simulation methods are used to study the folding of polymer chains into packed cubic states. The polymer model, based on a chain of linked sites moving in the continuum, includes both excluded volume and torsional…

Soft Condensed Matter · Physics 2009-11-10 D. C. Rapaport

The smooth piecewise-linear models cover a wide range of applications nowadays. Basically, there are two classes of them: models are transitional or hyperbolic according to their behaviour at the phase-transition zones. This study explored…

Methodology · Statistics 2020-11-17 Ferreira , Iuri Emmanuel de Paula , Zocchi , Silvio Sandoval

The mechanism of collectivity coexisting with chaos is investigated on the quantum level. The complex spectra are represented in the basis of two-particle two-hole states describing the nuclear double-charge exchange modes in $^{48}$Ca. An…

Nuclear Theory · Physics 2009-09-25 S. Drozdz , S. Nishizaki , J. Speth , M. Wojcik

We study surface diffusion in the framework of a generalized Frenkel-Kontorova model with a nonconvex transverse degree of freedom. The model describes a lattice of atoms with a given concentration interacting by Morse-type forces, the…

patt-sol · Physics 2019-08-17 Oleg M. Braun , Thierry Dauxois , Michel Peyrard

We study the equilibrium properties of a flexible homopolymer where consecutive monomers are represented by impenetrable hard spheres that are tangent to each other, and non-consecutive monomers interact via a square-well potential. To this…

Soft Condensed Matter · Physics 2012-04-25 Artem Badasyan , Trinh Xuan Hoang , Rudolf Podgornik , Achille Giacometti

Macroscopic models for systems involving diffusion, short-range repulsion, and long-range attraction have been studied extensively in the last decades. In this paper we extend the analysis to a system for two species interacting with each…

Analysis of PDEs · Mathematics 2018-03-23 Martin Burger , Marco Di Francesco , Simone Fagioli , Angela Stevens

The Kremer-Grest (KG) polymer model is a standard model for studying generic polymer properties in Molecular Dynamics simulations. It owes its popularity to its simplicity and computational efficiency, rather than its ability to represent…

Soft Condensed Matter · Physics 2020-03-16 Ralf Everaers , Hossein Ali Karimi-Varzaneh , Nils Hojdis , Frank Fleck , Carsten Svaneborg

The concept of exchange in strongly-correlated fermions is reviewed with emphasis on the generalization of the Heisenberg pair exchange to higher order n-particle permutations. The "frustration" resulting from competing ferromagnetic…

Strongly Correlated Electrons · Physics 2009-11-11 Michel Roger

The mechanism of collectivity coexisting with chaos in a finite system of strongly interacting fermions is investigated. The complex spectra are represented in the basis of two-particle two-hole states describing the nuclear double-charge…

chao-dyn · Physics 2009-10-30 S. Drozdz , S. Nishizaki , J. Speth , M. Wojcik

Colloidal particles that experience perfectly elastic collisions can be modelled using Langevin processes with specular reflection conditions. The article presents a discretisation scheme and offers a conjecture for the rate of convergence…

Statistical Mechanics · Physics 2017-08-30 Mireille Bossy , Radu Maftei , Jean-Pierre Minier , Christophe Profeta

We study the density fluctuations at equilibrium of the multi-species stirring process, a natural multi-type generalization of the symmetric (partial) exclusion process. In the diffusive scaling limit, the resulting process is a system of…

Probability · Mathematics 2023-09-19 Francesco Casini , Cristian Giardinà , Frank Redig

Volume-filling cross-diffusion equations for the components of a tissue structure are formally derived from mass conservation laws and force balances for the interphase pressures and viscous drag forces in a multiphase approach. The…

Analysis of PDEs · Mathematics 2026-04-03 Ansgar Jüngel , Cordula Reisch , Sara Xhahysa

By means of computer simulations and solution of the equations of the Mode Coupling Theory (MCT), we investigate the role of the intramolecular barriers on several dynamic aspects of non-entangled polymers. The investigated dynamic range…

Soft Condensed Matter · Physics 2015-05-18 Marco Bernabei , Angel J. Moreno , Emanuela Zaccarelli , Francesco Sciortino , Juan Colmenero

We present Molecular Dynamics simulations of the thermal glass transition in a dense model polymer liquid. We performed a comparative study of both constant volume and constant pressure cooling of the polymer melt. Great emphasis was laid…

Statistical Mechanics · Physics 2009-10-30 C. Bennemann , W. Paul , K. Binder , B. Duenweg

Recent developments of microscopic mechanical experiments allow the manipulation of individual polymer molecules in two main ways: \textit{uniform} stretching by external forces and \textit{non-uniform} stretching by external fields. Many…

Biological Physics · Physics 2015-06-11 Fabio Manca , Stefano Giordano , Pier Luca Palla , Fabrizio Cleri , Luciano Colombo

To study the cooling behavior and the glass transition of polymer melts in bulk and with free surfaces a coarse-grained weakly semi-flexible polymer model is developed. Based on a standard bead spring model with purely repulsive…

Soft Condensed Matter · Physics 2019-09-09 Hsiao-Ping Hsu , Kurt Kremer

A hybrid computational method coupling the lattice-Boltzmann (LB) method and a Langevin-dynamics (LD) method is developed to simulate nanoscale particle and polymer (NPP) suspensions in the presence of both thermal fluctuation and…

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