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Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

This work is concerned with the intricate interplay between node or pore pressures and connection or throat conductivities in flow or pore networks. A setting similar to pore networks is given by fracture networks. Recently, a non-local…

Fluid Dynamics · Physics 2019-07-30 Daniel W. Meyer , Artur Gomolinski

Any network studied in the literature is inevitably just a sampled representative of its real-world analogue. Additionally, network sampling is lately often applied to large networks to allow for their faster and more efficient analysis.…

Social and Information Networks · Computer Science 2015-04-14 Neli Blagus , Lovro Šubelj , Gregor Weiss , Marko Bajec

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

In this note we make some specific observations on the distribution of the degree of a given vertex in certain model of randomly growing networks. The rule for network growth is the following. Starting with an initial graph of minimum…

Combinatorics · Mathematics 2014-01-07 Linda Farczadi , Nicholas Wormald

Growth pattern dynamics lie at the heart of morphogenesis. Here, we investigate the growth of plant leaves. We compute the conformal transformation that maps the contour of a leaf at a given stage onto the contour of the same leaf at a…

Tissues and Organs · Quantitative Biology 2016-11-23 Karen Alim , Shahaf Armon , Boris I. Shraiman , Arezki Boudaoud

Growing graphs describe a multitude of developing processes from maturing brains to expanding vocabularies to burgeoning public transit systems. Each of these growing processes likely adheres to proliferation rules that establish an…

Quantitative Methods · Quantitative Biology 2020-05-27 Ann Sizemore Blevins , Danielle S. Bassett

Landscapes that are rhythmically dissected by natural drainage channels exist in various geologic and climatic settings. Such landscapes are characterized by a length-scale for the lateral spacing between channels. We observe a small-scale…

Pattern Formation and Solitons · Physics 2009-11-10 Norbert Schorghofer , Bill Jensen , Arshad Kudrolli , Daniel H. Rothman

We find that the simple coupling of network growth to the position of a random walker on the network generates a traveling wave in the probability distribution of nodes visited by the walker. We argue that the entropy of this probability…

Physics and Society · Physics 2019-06-26 Robert J. H. Ross , Charlotte Strandkvist , Walter Fontana

We constructs a new network by superposition of hexahedron , which are scale-free, highly sparse,disassortative ,and maximal planar graphs. The network degree distribution, agglomeration coefficient and degree of correlation are computed…

Physics and Society · Physics 2021-04-12 Li Haijun , Lu Qingping

Systems as diverse as genetic networks or the world wide web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This…

Disordered Systems and Neural Networks · Physics 2015-06-25 Albert-Laszlo Barabasi , Reka Albert

Networks having the geometry and the connectivity of trees are considered as the spatial support of spatiotemporal dynamical processes. A tree is characterized by two parameters: its ramification and its depth. The local dynamics at the…

Pattern Formation and Solitons · Physics 2009-11-07 M. G. Cosenza , K. Tucci

We study the role of finiteness and fluctuations about average quantities for basic structural properties of growing networks. We first determine the exact degree distribution of finite networks by generating function approaches. The…

Statistical Mechanics · Physics 2009-11-07 P. L. Krapivsky , S. Redner

The quest to understand structure-function relationships in networks across scientific disciplines has intensified. However, the optimal network architecture remains elusive, particularly for complex information processing. Therefore, we…

Adaptation and Self-Organizing Systems · Physics 2024-03-27 Manish Yadav , Sudeshna Sinha , Merten Stender

We study the dynamics of flow-networks in porous media using a pore-network model. First, we consider a class of erosion dynamics assuming a constitutive law depending on flow rate, local velocities, or shear stress at the walls. We show…

Fluid Dynamics · Physics 2022-06-22 Ahmad Zareei , Deng Pan , Ariel Amir

Regardless of a system's complexity or scale, its growth can be considered to be a spontaneous thermodynamic response to a local convergence of down-gradient material flows. Here it is shown how growth can be constrained to a few distinct…

Atmospheric and Oceanic Physics · Physics 2012-11-14 Timothy J. Garrett

One of the hallmarks of real networks is their ability to perform increasingly complex tasks as their topology evolves. To explain this, it has been observed that as a network grows certain subsets of the network begin to specialize the…

Adaptation and Self-Organizing Systems · Physics 2020-06-24 Leonid Bunimovich , DJ Passey , Dallas Smith , Benjamin Webb

We study diffusion of information packets on several classes of structured networks. Packets diffuse from a randomly chosen node to a specified destination in the network. As local transport rules we consider random diffusion and an…

Statistical Mechanics · Physics 2015-06-24 Bosiljka Tadic , Stefan Thurner

A cellular model introduced for the evolution of the fluvial landscape is revisited using extensive numerical and scaling analyses. The basic network shapes and their recurrence especially in the aggregation structure are then addressed.…

Statistical Mechanics · Physics 2009-10-31 G. Caldarelli

We highlight intriguing features of complex networks that are grown by \emph{redirection}. In this mechanism, a target node is chosen uniformly at random from the pre-existing network nodes and the new node attaches either to this initial…

Physics and Society · Physics 2025-01-14 P. L. Krapivsky , S. Redner
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