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Loops undergoing thermal fluctuations are prevalent in nature. Ring-like or cross-linked polymers, cyclic macromolecules, and protein-mediated DNA loops all belong to this category. Stability of these molecules are generally described in…

Computational Physics · Physics 2016-04-27 James T. Waters , Harold D. Kim

Turbulence is omnipresent in Nature and technology, governing the transport of heat, mass, and momentum on multiple scales. For real-world applications of wall-bounded turbulence, the underlying surfaces are virtually always rough; yet…

Twist stiffness and an asymmetric bending stiffness of a polymer or a polymer bundle is captured by the elastic ribbon model. We investigate the effects a ring geometry induces to a thermally fluctuating ribbon, finding bend-bend coupling…

Biomolecules · Quantitative Biology 2008-02-07 Karen Alim , Erwin Frey

We elucidate the elastic behavior of a wormlike chain in 3D under compression and provide exact solutions for the experimentally accessible force-extension relation in terms of generalized spheroidal wave functions. In striking contrast to…

Soft Condensed Matter · Physics 2019-11-11 Christina Kurzthaler

We perform extensive Monte Carlo simulations of binary hard-sphere mixtures (with diameter ratios of 5 and 10), to determine the entropic force between (1) a macrosphere and a hard wall, and (2) a pair of macrospheres. The microsphere…

Statistical Mechanics · Physics 2009-10-30 Ronald Dickman , Phil Attard , Veronika Simonian

The number of configurations of a polymer is reduced in the presence of a barrier or an obstacle. The resulting loss of entropy adds a repulsive component to other forces generated by interaction potentials. When the obstructions are scale…

Soft Condensed Matter · Physics 2015-06-11 Mohammad F. Maghrebi , Yacov Kantor , Mehran Kardar

Nano-scale confinement of polymer in cone-shaped geometries occurs in many experimental situations. A flexible polymer confined in a cone-shaped nano-channel is studied theoretically and using molecular dynamics simulations. Distribution of…

Soft Condensed Matter · Physics 2016-02-24 Narges Nikoofard , Hossein Fazli

Bending the edge of a thin elastic material promotes rigidity far from its clamped boundary. However, this curvature-induced rigidity can be overwhelmed by gravity or other external loading, resulting in elastic buckling and large…

Soft Condensed Matter · Physics 2025-04-16 Hanzhang Mao , Thomas G. J. Chandler , Mark Han , Saverio E. Spagnolie

Confined geometries offer useful and experimentally amenable mechanical testing arrangements in which to study the molecular and micro-structural processes which govern plastic yield in stress environments dominated by hydrostatic pressure…

Materials Science · Physics 2021-06-09 Owen Brazil , Johann P. de Silva , John B. Pethica , Graham L. W. Cross

We consider the effect of surface roughness on solid-solid contact in a Stokes flow. Various models for the roughness are considered, and a unified methodology is given to derive the corresponding asymptotics of the drag force. In this way,…

Analysis of PDEs · Mathematics 2011-03-09 David Gérard-Varet , Matthieu Hillairet

We investigate the statistical mechanics of a torsionally constrained polymer. The polymer is modeled as a fluctuating rod with bend stiffness A kT and twist stiffness C kT. In such a model, thermal bend fluctuations couple geometrically to…

Soft Condensed Matter · Physics 2009-10-30 J. David Moroz , Philip Nelson

The non-equilibrium structural and dynamical properties of semiflexible polymers confined to two dimensions are investigated by molecular dynamics simulations. Three different scenarios are considered: The force-extension relation of…

Soft Condensed Matter · Physics 2013-01-08 A. Lamura , R. G. Winkler

We report a molecular dynamics simulation investigating the dynamics of a simple liquid in the proximity to a non-interacting smooth confining wall. A strong enhancement of the liquid diffusion is observed within the layers adjacent to the…

Materials Science · Physics 2024-12-06 Lorenzo Agosta , Mikhail Dzugutov , Wim Briels , Kersti Hermansson

I consider the possibility that Gaussian random walk statistics are sufficient to trap nanoscopic additives at either a polymer interface or surface. When an additive particle goes to the free surface, two portions of the polymer surface…

Soft Condensed Matter · Physics 2015-05-26 Galen T. Pickett

The interaction between near-wall turbulence and wall curvature is described for the incompressible flow in a plane channel with a small concave-convex-concave bump on the bottom wall, with height comparable to the wall-normal location of…

Fluid Dynamics · Physics 2024-05-13 Davide Selvatici , Maurizio Quadrio , Alessandro Chiarini

Utilizing colloidal probe, lateral force microscopy and simultaneous confocal microscopy, combined with finite element analysis, we investigate the mechanism of static friction for a microparticle on a soft, adhesive surface. We find that…

Soft Condensed Matter · Physics 2023-04-26 Justin D. Glover , Xingwei Yang , Rong Long , Jonathan T. Pham

We have studied experimentally and theoretically the response of randomly folded hyperelastic and elastoplastic sheets on the uniaxial compression loading and the statistical properties of crumpling networks. The results of these studies…

Statistical Mechanics · Physics 2008-08-26 Alexander S. Balankin , Orlando Susarrey Huerta

Direct numerical simulation of open channel flow over a geometrically rough wall has been performed at a bulk Reynolds number of approximately 2900. The wall consisted of a layer of spheres in a square arrangement. Two cases have been…

Fluid Dynamics · Physics 2013-01-28 Clemens Chan-Braun , Manuel García-Villalba , Markus Uhlmann

We amplify previous arguments why mean curvature should be used as measure of integration in calculating the effective bending rigidity of fluid membranes subjected to a weak background curvature. The stiffening of the membrane by its…

Statistical Mechanics · Physics 2009-10-31 H. A. Pinnow , W. Helfrich

We study a model of a semiflexible long chain polymer confined to a two-dimensional slit of width $w$, and interacting with the walls of the slit. The interactions with the walls are controlled by Boltzmann weights $a$ and $b$, and the…

Statistical Mechanics · Physics 2019-12-03 Nicholas R. Beaton , Leo Li , Jonathon Liu , Thomas Wong