Related papers: Note on islands in path-length sequences of binary…
The Steiner distance of vertices in a set $S$ is the minimum size of a connected subgraph that contain these vertices. The sum of the Steiner distances over all sets $S$ of cardinality $k$ is called the Steiner $k$-Wiener index and studied…
The number of topologically different plane real algebraic curves of a given degree $d$ has the form $\exp(C d^2 + o(d^2))$. We determine the best available upper bound for the constant $C$. This bound follows from Arnold inequalities on…
Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…
We study a family of tree-type diagrams that arise in studies of the cumulant expansion in discrete Erd\H os-R\'enyi random matrix models. Using a version of the Pr\" ufer code, we obtain an explicit expression for the number of tree-type…
Let k be a local field and let A be the two-by-two matrix algebra over k. In our previous work we developed a theory that allows the computation of the set of maximal orders in A containing a given suborder. This set is given as a sub-tree…
The sequence A120986 in the Encyclopedia of Integer Sequences counts ternary trees according to the number of nodes and the number of middle edges. Using a certain substition, the underlying cubic equation can be factored. This leads to an…
We present a new definition of non-ambiguous trees (NATs) as labelled binary trees. We thus get a differential equation whose solution can be described combinatorially. This yield a new formula for the number of NATs. We also obtain…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
In our previous work, we introduced the random $k$-cut number for rooted graphs. In this paper, we show that the distribution of the $k$-cut number in complete binary trees of size $n$, after rescaling, is asymptotically a periodic function…
The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree…
We study an equilibrium statistical mechanical model of tree graphs which are made up of a linear subgraph (the spine) to which leaves are attached. We prove that the model has two phases, a generic phase where the spine becomes infinitely…
We introduce tree dimension and its leveled variant in order to measure the complexity of leaf sets in binary trees. We then provide a tight upper bound on the size of such sets using leveled tree dimension. This, in turn, implies both the…
Hex-trees are identified as a particular instance of weighted unary-binary trees. The Horton-Strahler numbers of these objects are revisited, and, thanks to a substitution that is not immediately intuitive, explicit results are possible.…
This paper proves that two differently defined rooted binary trees are isomorphic. The first tree is one associated to a version of Farey sequences where the vertices correspond to the open intervals formed by two successive terms in the…
Topographs, introduced by Conway in 1997, are infinite trivalent planar trees used to visualize the values of binary quadratic forms. In this work, we study series whose terms are indexed by the vertices of a topograph and show that they…
The binary indexed tree, or Fenwick tree, is a data structure that can efficiently update values and calculate prefix sums in an array. It allows both of these operations to be performed in $O(\log_2 N)$ time. Here we present a novel data…
Periodic trees are combinatorial structures which are in bijection with cluster tilting objects in cluster categories of affine type $\tilde{A}_{n-1}$. The internal edges of the tree encode the $c$-vectors corresponding to the cluster…
Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…
A true Tree Calculus is being developed to make a joint study of the two statistics "eoc" (end of minimal chain) and "pom" (parent of maximum leaf) on the set of secant trees. Their joint distribution restricted to the set {eoc-pom<= 1} is…
A subtree can be induced in a natural way by a subset of leaves of a rooted tree. We study the number of nonisomorphic such subtrees induced by leaves (leaf-induced subtrees) of a rooted tree with no vertex of outdegree 1 (topological…