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In parametric sequence alignment, optimal alignments of two sequences are computed as a function of the penalties for mismatches and spaces, producing many different optimal alignments. Here we give a 3/(2^{7/3}\pi^{2/3})n^{2/3} +O(n^{1/3}…
Motivated by the study of deletion channels, this work presents improved bounds on the number of subsequences obtained from a binary sting X of length n under t deletions. It is known that the number of subsequences in this setting strongly…
We study the pattern frequency vector for runs in probabilistic Vector Addition Systems with States (pVASS). Intuitively, each configuration of a given pVASS is assigned one of finitely many patterns, and every run can thus be seen as an…
We refine a uniform algebraic approach for deriving upper bounds on reset thresholds of synchronizing automata. We express the condition that an automaton is synchronizing in terms of linear algebra, and obtain upper bounds for the reset…
Semi-regular sequences over $\mathbb{F}_2$ are sequences of homogeneous elements of the algebra $ B^{(n)}=\mathbb{F}_2[X_1,...,X_n]/(X_1^2,...,X_n^2) $, which have as few relations between them as possible. They were introduced in order to…
We introduce several new constructions for perfect periodic autocorrelation sequences and arrays over the unit quaternions. This paper uses both mathematical proofs and com- puter experiments to prove the (bounded) array constructions have…
Pseudo-random sequences with good statistical property, such as low autocorrelation, high linear complexity and large 2-adic complexity, have been applied in stream cipher. In general, it is difficult to give both the linear complexity and…
We show that no projective 16-divisible binary linear code of length 131 exists. This implies several improved upper bounds for constant-dimension codes, used in random linear network coding, and partial spreads.
The discrepancy of a binary string refers to the maximum (absolute) difference between the number of ones and the number of zeroes over all possible substrings of the given binary string. We provide an investigation of the discrepancy of…
The purpose of this paper is two-fold. First, we characterize the existence of binary self-orthogonal codes meeting the Griesmer bound by employing Solomon-Stiffler codes and some related residual codes. Second, using such a…
The arithmetic crosscorrelation of binary $m$-sequences with coprime periods $2^{n_1}-1$ and $2^{n_2}-1$\ ($\gcd(n_1,n_2)=1$) is determined. The result shows that the absolute value of arithmetic crosscorrelation of such binary…
This paper provides an upper bound for several subsets of maximal repeats and maximal pairs in compressed strings and also presents a formerly unknown relationship between maximal pairs and the run-length Burrows-Wheeler transform. This…
The autocorrelation and the linear complexity of a key stream sequence in a stream cipher are important cryptographic properties. Many sequences with these good properties have interleaved structure, three classes of binary sequences of…
We introduce a natural class of models of random chain complexes of real vector spaces that some classical ensembles of random matrices, the length $1$ case. We are interested here in the homological properties of these random complexes.…
Traditional error-correcting codes (ECCs) assume a fixed message length, but many scenarios involve ongoing or indefinite transmissions where the message length is not known in advance. For example, when streaming a video, the user should…
Nonlinear complexity is an important measure for assessing the randomness of sequences. In this paper we investigate how circular shifts affect the nonlinear complexities of finite-length binary sequences and then reveal a more explicit…
Experimental results show that, when the order $n$ is odd, there are de Bruijn sequences such that the corresponding complement sequence and the reverse sequence are the same. In this paper, we propose one efficient method to generate such…
The existence of greatest lower bounds in the imbalance order of path-length sequences of binary trees is seen to be a consequence of a joint monotonicity property of the greater and lower expension operations. Path length sequences that…
Binary sequences with low autocorrelations are important in communication engineering and in statistical mechanics as groundstates of the Bernasconi-model. Computer searches are the main tool to construct such sequences. Due to the…
In this paper, we study $F_{n}(x,k)$, the number of binary strings of length $n$ containing $x$ zeros and a longest subword of $k$ zeros. A recurrence relation for $F_{n}(x,k)$ is derived. We expressed few known numbers like Fibonacci,…