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We present exact results for the degree distribution in a directed network model that grows by node duplication (ND). Such models are useful in the study of the structure and growth dynamics of gene regulatory networks and scientific…

Physics and Society · Physics 2019-08-21 Chanania Steinbock , Ofer Biham , Eytan Katzav

The use of data-random graphs in statistical testing of spatial patterns is introduced recently. In this approach, a random directed graph is constructed from the data using the relative positions of the points from various classes.…

Statistics Theory · Mathematics 2009-07-01 Elvan Ceyhan

We consider the problem of graph generation guided by network statistics, i.e., the generation of graphs which have given values of various numerical measures that characterize networks, such as the clustering coefficient and the number of…

Social and Information Networks · Computer Science 2023-03-02 Jérôme Kunegis , Jun Sun , Eiko Yoneki

A large number of complex systems, naturally emerging in various domains, are well described by directed networks, resulting in numerous interesting features that are absent from their undirected counterparts. Among these properties is a…

Physics and Society · Physics 2021-05-19 Joseph D. O'Brien , Kleber A. Oliveira , James P. Gleeson , Malbor Asllani

We present a new angle on the expressive power of graph neural networks (GNNs) by studying how the predictions of real-valued GNN classifiers, such as those classifying graphs probabilistically, evolve as we apply them on larger graphs…

Machine Learning · Computer Science 2024-11-11 Sam Adam-Day , Michael Benedikt , İsmail İlkan Ceylan , Ben Finkelshtein

The two most popular types of graphical model are directed models (Bayesian networks) and undirected models (Markov random fields, or MRFs). Directed and undirected models offer complementary properties in model construction, expressing…

Artificial Intelligence · Computer Science 2012-12-12 Brendan J. Frey

This paper considers the problem of embedding directed graphs in Euclidean space while retaining directional information. We model a directed graph as a finite set of observations from a diffusion on a manifold endowed with a vector field.…

Machine Learning · Statistics 2014-06-03 Dominique Perrault-Joncas , Marina Meila

The purpose of this article is to present a general method to find limiting laws for some renormalized statistics on random permutations. The model considered here is Ewens sampling model, which generalizes uniform random permutations. We…

Probability · Mathematics 2013-10-28 Valentin Féray

In statistical mechanical investigations on complex networks, it is useful to employ random graphs ensembles as null models, to compare with experimental realizations. Motivated by transcription networks, we present here a simple way to…

Statistical Mechanics · Physics 2009-11-11 F. Bassetti , M. Cosentino Lagomarsino , B. Bassetti , P. Jona

This paper studies detecting anomalous edges in directed graphs that model social networks. We exploit edge exchangeability as a criterion for distinguishing anomalous edges from normal edges. Then we present an anomaly detector based on…

Social and Information Networks · Computer Science 2023-08-22 Rui Luo , Buddhika Nettasinghe , Vikram Krishnamurthy

Sampling algorithms, hypergraph degree sequences, and polytopes play a crucial role in statistical analysis of network data. This article offers a brief overview of open problems in this area of discrete mathematics from the point of view…

Discrete Mathematics · Computer Science 2016-01-11 Sonja Petrović

We find the asymptotic number of connected graphs with $k$ vertices and $k-1+l$ edges when $k,l$ approach infinity, reproving a result of Bender, Canfield and McKay. We use the {\em probabilistic method}, analyzing breadth-first search on…

Combinatorics · Mathematics 2007-05-23 Remco van der Hofstad , Joel Spencer

We enumerate the connected graphs that contain a number of edges growing linearly with respect to the number of vertices. So far, only the first term of the asymptotics and a bound on the error were known. Using analytic combinatorics, ie…

Combinatorics · Mathematics 2018-10-12 Elie de Panafieu

The undirected degree/diameter and degree/girth problems and their directed analogues have been studied for many decades in the search for efficient network topologies. Recently such questions have received much attention in the setting of…

Combinatorics · Mathematics 2018-11-05 James Tuite , Grahame Erskine

Graphical models with bi-directed edges (<->) represent marginal independence: the absence of an edge between two vertices indicates that the corresponding variables are marginally independent. In this paper, we consider maximum likelihood…

Methodology · Statistics 2012-12-12 Mathias Drton , Thomas S. Richardson

Dynamic graphs have emerged as an appropriate model to capture the changing nature of many modern networks, such as peer-to-peer overlays and mobile ad hoc networks. Most of the recent research on dynamic networks has only addressed the…

Data Structures and Algorithms · Computer Science 2011-02-02 Oksana Denysyuk , Luis Rodrigues

We introduce a new oriented evolving graph model inspired by biological networks. A node is added at each time step and is connected to the rest of the graph by random oriented edges emerging from older nodes. This leads to a statistical…

Disordered Systems and Neural Networks · Physics 2023-04-10 Michel Bauer , Denis Bernard

Most statistical models for networks focus on pairwise interactions between nodes. However, many real-world networks involve higher-order interactions among multiple nodes, such as co-authors collaborating on a paper. Hypergraphs provide a…

Methodology · Statistics 2025-09-16 Yichao Chen , Jingfei Zhang , Ji Zhu

We enumerate the connected graphs that contain a linear number of edges with respect to the number of vertices. So far, only the first term of the asymptotics was known. Using analytic combinatorics, i.e. generating function manipulations,…

Combinatorics · Mathematics 2016-04-26 Elie de Panafieu

Let $G = (V,E)$ be a connected directed graph on $n$ vertices. Assign values from the set $\{1,2,\dots,n\}$ to the vertices of $G$ and update the values according to the following rule: uniformly at random choose a vertex and update its…

Data Structures and Algorithms · Computer Science 2024-06-05 John Larkin
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