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The relationship between microscopic observations and macroscopic behavior is a fundamental open question in biophysical systems. Here, we develop a unified approach that---in contrast with existing methods---predicts cell type from…

Genomics · Quantitative Biology 2020-03-31 Thomas P. Wytock , Adilson E. Motter

The trace-fossil record serves as a rich dataset to examine fossil behaviour, ecologic interactions at community level, and evolutionary trends in behaviour across geological time. Behavioural adaptations are often invoked in a variety of…

Populations and Evolution · Quantitative Biology 2025-09-03 Brittany A. Laing , Zoe Vestrum , Luke C. Strotz , M. Gabriela Mángano , Luis A. Buatois , Glenn A. Brock , Lyndon Koens

This paper presents an end-to-end approach for tracking static and dynamic objects for an autonomous vehicle driving through crowded urban environments. Unlike traditional approaches to tracking, this method is learned end-to-end, and is…

Computer Vision and Pattern Recognition · Computer Science 2017-04-20 Julie Dequaire , Dushyant Rao , Peter Ondruska , Dominic Wang , Ingmar Posner

We present results from a comprehensive numerical study of {\it morphological phase separation} (MPS) in unstable thin liquid films on a 2-dimensional substrate. We study the quantitative properties of the evolution morphology via several…

Soft Condensed Matter · Physics 2017-09-13 Prabhat K. Jaiswal , Manish Vashishtha , Sanjay Puri , Rajesh Khanna

Analyzing the dynamical properties of mobile objects requires to extract trajectories from recordings, which is often done by tracking movies. We compiled a database of two-dimensional movies for very different biological and physical…

Quantitative Methods · Quantitative Biology 2021-06-09 Benjamin Gallois , Raphaël Candelier

Eye trackers can provide visual guidance to sonographers during ultrasound (US) scanning. Such guidance is potentially valuable for less experienced operators to improve their scanning skills on how to manipulate the probe to achieve the…

Computer Vision and Pattern Recognition · Computer Science 2022-07-27 Qianhui Men , Clare Teng , Lior Drukker , Aris T. Papageorghiou , J. Alison Noble

Precise control is an essential and elusive quality of emerging self-driving microscopes. It is widely understood these instruments must be capable of performing rapid, high-volume, and arbitrary movements for practical self-driving…

The visual observation and tracking of cells and other micrometer-sized objects has many different biomedical applications. The automation of those tasks based on computer methods helps in the evaluation of such measurements. In this work,…

Computer Vision and Pattern Recognition · Computer Science 2014-12-04 Alexandra Heidsieck

Camera traps, combined with AI, have emerged as a way to achieve automated, scalable biodiversity monitoring. However, the passive infrared (PIR) sensors that trigger camera traps are poorly suited for detecting small, fast-moving…

Quantitative Methods · Quantitative Biology 2025-02-18 Ross Gardiner , Sareh Rowands , Benno I. Simmons

Multi-camera tracking plays a pivotal role in various real-world applications. While end-to-end methods have gained significant interest in single-camera tracking, multi-camera tracking remains predominantly reliant on heuristic techniques.…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Alexandru Niculescu-Mizil , Deep Patel , Iain Melvin

Three-dimensional (3D) fluorescence microscopy in general requires axial scanning to capture images of a sample at different planes. Here we demonstrate that a deep convolutional neural network can be trained to virtually refocus a 2D…

Computer Vision and Pattern Recognition · Computer Science 2019-11-05 Yichen Wu , Yair Rivenson , Hongda Wang , Yilin Luo , Eyal Ben-David , Laurent A. Bentolila , Christian Pritz , Aydogan Ozcan

General movements (GMs) are spontaneous, coordinated body movements in infants that offer valuable insights into the developing nervous system. Assessed through the Prechtl GM Assessment (GMA), GMs are reliable predictors for…

Machine Learning · Computer Science 2025-08-08 Daphné Chopard , Sonia Laguna , Kieran Chin-Cheong , Annika Dietz , Anna Badura , Sven Wellmann , Julia E. Vogt

Tracking cell particles in 3D microscopy videos is a challenging task but is of great significance for modeling the motion of cells. Proper characterization of the cell's shape, evolution, and their movement over time is crucial to…

Computer Vision and Pattern Recognition · Computer Science 2021-01-13 Mojtaba S. Fazli , Rachel V. Stadler , BahaaEddin Alaila , Stephen A. Vella , Silvia N. J. Moreno , Gary E. Ward , Shannon Quinn

Brain research has been driven by enquiry for principles of brain structure organization and its control mechanisms. The neuronal wiring map of C. elegans, the only complete connectome available till date, presents an incredible opportunity…

Neurons and Cognition · Quantitative Biology 2016-11-28 Rahul Badhwar , Ganesh Bagler

Model fingerprinting has emerged as a powerful tool for model owners to identify their shared model given API access. However, to lower false discovery rate, fight fingerprint leakage, and defend against coalitions of model users attempting…

Cryptography and Security · Computer Science 2025-10-01 Anshul Nasery , Jonathan Hayase , Creston Brooks , Peiyao Sheng , Himanshu Tyagi , Pramod Viswanath , Sewoong Oh

This article presents a semantic tracker which simultaneously tracks a single target and recognises its category. In general, it is hard to design a tracking model suitable for all object categories, e.g., a rigid tracker for a car is not…

Computer Vision and Pattern Recognition · Computer Science 2016-11-22 Jingjing Xiao , Qiang Lan , Linbo Qiao , Ales Leonardis

Laparoscopic video tracking primarily focuses on two target types: surgical instruments and anatomy. The former could be used for skill assessment, while the latter is necessary for the projection of virtual overlays. Where instrument and…

Computer Vision and Pattern Recognition · Computer Science 2024-03-29 Beerend G. A. Gerats , Jelmer M. Wolterink , Seb P. Mol , Ivo A. M. J. Broeders

The complexity of a legged robot's environment or task can inform how specialised its gait must be to ensure success. Evolving specialised robotic gaits demands many evaluations - acceptable for computer simulations, but not for physical…

Robotics · Computer Science 2019-02-13 Tønnes Frostad Nygaard , Charles Patrick Martin , Jim Torresen , Kyrre Glette

Fish tracking is a key technology for obtaining movement trajectories and identifying abnormal behavior. However, it faces considerable challenges, including occlusion, multi-scale tracking, and fish deformation. Notably, extant reviews…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Weiran Li , Zhenbo Li , Fei Li , Meng Yuan , Chaojun Cen , Yanyu Qi , Qiannan Guo , You Li

How to compare whole genome sequences at large scale has not been achieved via conventional methods based on pair-wisely base-to-base comparison; nevertheless, no attention was paid to handle in-one-sitting a number of genomes crossing…

Genomics · Quantitative Biology 2014-03-05 Yuncan Ai , Hannan Ai , Fanmei Meng , Lei Zhao