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In Bhattacharya et al. (Science Advances, 2020), a set of chemical reactions involved in the dynamics of actin waves in cells was studied. Both at the microscopic level, where the individual chemical reactions are directly modelled using…

Analysis of PDEs · Mathematics 2023-02-01 Christian Hamster , Peter van Heijster

The idealized general model of aggregate growth is considered on the basis of the simple additive rules that correspond to one-step aggregation process. The two idealized cases were analytically investigated and simulated by Monte Carlo…

Statistical Mechanics · Physics 2014-07-02 Yuri G. Gordienko

We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations correspond to different footprints on the substrate: in order to…

Statistical Mechanics · Physics 2019-06-26 Yvan Rousset , Luca Ciandrini , Norbert Kern

A ubiquitous feature of living cells is their growth over time followed by division into daughter cells. How isogenic cell populations maintain size homeostasis, i.e., a narrow distribution of cell size, is an intriguing fundamental…

Cell Behavior · Quantitative Biology 2016-06-03 César Augusto Vargas-García , Mohammad Soltani , Abhyudai Singh

We consider a generic class of stochastic particle-based models whose state at an instant in time is described by a set of continuous degrees of freedom (e.g. positions), and the length of this set changes stochastically in time due to…

Statistical Mechanics · Physics 2025-09-03 Samuel Cameron , Elsen Tjhung

The purpose of this paper is to analyze the mechanism for the interplay of deterministic and stochastic models for contagious diseases. Deterministic models for contagious diseases are prone to predict global stability. Small natural birth…

Populations and Evolution · Quantitative Biology 2022-06-17 Torsten Lindström

Hash Chemistry, a minimalistic artificial chemistry model of open-ended evolution, has recently been extended to non-spatial and cellular versions. The non-spatial version successfully demonstrated continuous adaptation and unbounded growth…

Populations and Evolution · Quantitative Biology 2024-12-18 Hiroki Sayama

Cellular transformations which involve a significant phenotypical change of the cell's state use bistable biochemical switches as underlying decision systems. In this work, we aim at linking cellular decisions taking place on a time scale…

Cell Behavior · Quantitative Biology 2010-05-11 Steffen Waldherr , Jingbo Wu , Frank Allgöwer

The scaling behavior of cyclical growth (e.g. cycles of alternating deposition and desorption primary processes) is investigated theoretically and probed experimentally. The scaling approach to kinetic roughening is generalized to cyclical…

Statistical Mechanics · Physics 2009-11-07 Subhadip Raychaudhuri , Yonathan Shapir , David G. Foster , Jacob Jorne

Mechanical stresses stemming from environmental factors are a key determinant of cellular behavior and physiology. Yet, the role of self-induced biomechanical stresses in growing bacterial colonies has remained largely unexplored. Here, we…

Soft Condensed Matter · Physics 2023-11-27 René Wittmann , G. H. Philipp Nguyen , Hartmut Löwen , Fabian J. Schwarzendahl , Anupam Sengupta

We introduce a model of a randomly growing interface in multidimensional Euclidean space. The growth model incorporates a random order model as an ingredient of its graphical construction, in a way that replicates the connection between the…

Probability · Mathematics 2007-09-12 Timo Seppäläinen

Single-cell experiments have revealed cell-to-cell variability in generation times and growth rates for genetically identical cells. Theoretical models relating the fluctuating generation times of single cells to the population growth rate…

Populations and Evolution · Quantitative Biology 2020-01-15 Jie Lin , Ariel Amir

We introduce a solvable model of randomly growing systems consisting of many independent subunits. Scaling relations and growth rate distributions in the limit of infinite subunits are analysed theoretically. Various types of scaling…

Physics and Society · Physics 2015-06-12 Misako Takayasu , Hayafumi Watanabe , Hideki Takayasu

The report considers the dynamics of the global population as the unique case of the Socio-Economic Soft Matter system. This category was introduced for complex systems dominated by mesoscale assemblies, emerging due to the inherent…

Physics and Society · Physics 2022-09-07 Agata Angelika Rzoska , Aleksandra Drozd-Rzoska

We numerically investigate the long--time evolution of density perturbations after the first appearance of caustics in an expanding cosmological model with one--dimensional `single--wave' initial conditions. Focussing on the time--intervals…

Astrophysics · Physics 2007-05-23 Taihei Yano , Hiroko Koyama , Thomas Buchert , Naoteru Gouda

We consider stochastic discrete event dynamic systems that have time evolution represented with two-dimensional state vectors through a vector equation that is linear in terms of an idempotent semiring. The state transitions are governed by…

Optimization and Control · Mathematics 2012-12-27 Nikolai Krivulin

The ubiquitous existence of microbial communities marks the importance of understanding how species interact within the community to coexist and their spatial organization. We study a two-species mutualistic cross-feeding model through a…

Populations and Evolution · Quantitative Biology 2022-10-31 Jiaqi. Lin , Hui. Sun , JiaJia Dong

Motivated by recent experimental studies in microbiology, we suggest a modification of the classic ballistic deposition model of surface growth, where the memory of a deposition at a site induces more depositions at that site or its…

Cellular Automata and Lattice Gases · Physics 2022-02-24 Ahmed Roman , Ruomin Zhu , Ilya Nemenman

We present a unifying, consistent, finite-size-scaling picture for percolation theory bringing it into the framework of a general, renormalization-group-based, scaling scheme for systems above their upper critical dimensions $d_c$.…

Statistical Mechanics · Physics 2017-05-16 Ralph Kenna , Bertrand Berche

We investigate how the properties of inhomogeneous patterns of activity, appearing in many natural and social phenomena, depend on the temporal resolution used to define individual bursts of activity. To this end, we consider time series of…

Physics and Society · Physics 2021-03-03 Daniele Notarmuzi , Claudio Castellano , Alessandro Flammini , Dario Mazzilli , Filippo Radicchi