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Cells actively regulate their size during the cell cycle to maintain volume homeostasis across generations. While various mathematical models of cell size regulation have been proposed to explain how this is achieved, relating these models…

Quantitative Methods · Quantitative Biology 2025-04-11 Kaan Öcal , Michael P. H. Stumpf

Unveiling universal non-equilibrium scaling laws has been a central theme in modern statistical physics, with recent attention increasingly directed toward non-equilibrium phases that exhibit rich dynamical phenomena. A striking example…

Statistical Mechanics · Physics 2025-12-15 Shuoguang Liu , Peter B. Littlewood , Ryo Hanai

Textual analysis of typical microbial genomes reveals that they have the statistical characteristics of a DNA sequence of a much shorter length. This peculiar property supports an evolutionary model in which a genome evolves by random…

Biological Physics · Physics 2009-11-07 L. C. Hsieh , L. F. Luo , F. M. Ji , H. C. Lee

A stochastic system of particles is considered in which the sizes of the particles increase by successive binary mergers with the constraint that each coagulation event involves a particle with minimal size. Convergence of a suitably…

Probability · Mathematics 2011-10-31 Anne-Laure Basdevant , Philippe Laurencot , James R. Norris , Clement Rau

Early estimates of the transmission potential of emerging and re-emerging infections are increasingly used to inform public health authorities on the level of risk posed by outbreaks. Existing methods to estimate the reproduction number…

Quantitative Methods · Quantitative Biology 2016-10-10 Gerardo Chowell , Cécile Viboud , Lone Simonsen , Seyed Moghadas

A central problem in population ecology is understanding the consequences of stochastic fluctuations. Analytically tractable models with Gaussian driving noise have led to important, general insights, but they fail to capture rare,…

Populations and Evolution · Quantitative Biology 2017-12-08 Brandon H. Schlomann

A simulation approach to the stochastic growth of bacterial towers is presented, in which a non-uniform and finite nutrient supply essentially determines the emerging structure through elementary chemotaxis. The method is based on cellular…

Populations and Evolution · Quantitative Biology 2009-11-10 J. O. Indekeu , C. V. Giuraniuc

Comprehensive models of stochastic, clonally reproducing populations are defined in terms of general branching processes, allowing birth during maternal life, as for higher organisms, or by splitting, as in cell division. The populations…

Populations and Evolution · Quantitative Biology 2014-10-14 Kais Hamza , Peter Jagers , Fima C. Klebaner

We examine the classic problem of homogeneous nucleation and growth by deriving and analyzing a fully discrete stochastic master equation. Upon comparison with results obtained from the corresponding mean-field Becker-D\"{o}ring equations…

Statistical Mechanics · Physics 2015-06-03 M. R. D'Orsogna , G. Lakatos , T. Chou

Excitable media can develop spiral chaos, in which the number of spirals changes chaotically with time. Depending on parameter values in dynamical equations, spiral chaos may permanently persist or spontaneously arrive at a steady state…

Chaotic Dynamics · Physics 2016-01-05 Kaori Sugimura , Hiroshi Kori

The data we analyze derives from the observation of numerous cells of the bacterium Escherichia coli (E. coli) growing and dividing. Single cells grow and divide to give birth to two daughter cells, that in turn grow and divide. Thus, a…

Applications · Statistics 2015-09-18 Bernard Delyon , Benoîte de Saporta , Nathalie Krell , Lydia Robert

A stochastic model for behavioral changes by imitative pair interactions of individuals is developed. `Microscopic' assumptions on the specific form of the imitative processes lead to a stochastic version of the game dynamical equations.…

Statistical Mechanics · Physics 2007-05-23 Dirk Helbing

We investigate the large time behavior of an agent based model describing tumor growth. The microscopic model combines short-range repulsion and cell division. As the number of cells increases exponentially in time, the microscopic model is…

Soft Condensed Matter · Physics 2017-01-04 Sebastien Motsch , Diane Peurichard

Recently, West et al. claimed to derive a general quantitative model based on fundamental principles for the allocation of metabolic energy between maintenance of existing tissue and the production of new biomass, and in addition claimed to…

Condensed Matter · Physics 2007-05-23 Jayanth R. Banavar , John Damuth , Amos Maritan , Andrea Rinaldo

The characteristic time for the electrocoalescence of two sessile drops is identified and verified for wide range of operating parameters such as Ohnesorge, Electrowetting number, driving frequency and drop to surrounding medium viscosity.…

Fluid Dynamics · Physics 2020-08-26 Juan S. Marin Quintero , Markus Cäsar , Prashant R. Waghmare

Stochastic epidemic models describe the dynamics of an epidemic as a disease spreads through a population. Typically, only a fraction of cases are observed at a set of discrete times. The absence of complete information about the time…

Computation · Statistics 2017-02-14 Jonathan Fintzi , Xiang Cui , Jon Wakefield , Vladimir N. Minin

The Supercritical Fluid (SCF) is known to exhibit salient dynamic and thermodynamic crossovers and inhomogeneous molecular distribution. But the question as to what basic physics underlies these microscopic and macroscopic anomalies remains…

Soft Condensed Matter · Physics 2020-01-01 Min Young Ha , Tae Jun Yoon , Tsvi Tlusty , YongSeok Jho , Won Bo Lee

We study stochastic particle systems on a complete graph and derive effective mean-field rate equations in the limit of diverging system size, which are also known from cluster aggregation models. We establish the propagation of chaos under…

Probability · Mathematics 2021-07-21 Watthanan Jatuviriyapornchai , Stefan Grosskinsky

We consider one-dimensional infinite chains of harmonic oscillators with random exchanges of momenta and long-range interaction potentials which have polynomial decay rate $|x|^{-\theta}, x \to \infty, \theta > 1$ where $x \in \mathbb{Z}$…

Mathematical Physics · Physics 2022-05-04 Hayate Suda

We consider several one-species population dynamics model with finite and infinite carrying capacity, time dependent growth and effort rates and solve them analytically. We show that defining suitable scaling functions for a given time, one…

Disordered Systems and Neural Networks · Physics 2011-11-14 Alexandre Souto Martinez , Brenno Caetano Trocca Cabella , Fabiano Ribeiro