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Genetic dispositions play a major role in individual disease risk and treatment response. Genomic medicine, in which medical decisions are refined by genetic information of particular patients, is becoming increasingly important. Here we…

Other Computer Science · Computer Science 2011-09-30 Matthias Samwald , Holger Stenzhorn , Michel Dumontier , M. Scott Marshall , Joanne Luciano , Klaus-Peter Adlassnig

Life cycle assessment (LCA) plays a critical role in assessing the environmental impacts of a product, technology, or service throughout its entire life cycle. Nonetheless, many existing LCA tools and methods lack adequate metadata…

Databases · Computer Science 2024-05-17 Kourosh Malek , Max Dreger , Zirui Tang , Qingshi Tu

In this article, we investigate our early attempts at building an ontology describing rehabilitation therapies following brain injury. These therapies are wide-ranging, involving interventions of many different kinds. As a result, these…

Information Retrieval · Computer Science 2017-09-28 Mohammad K. Halawani , Rob Forsyth , Phillip Lord

A key challenge for Industry 4.0 applications is to develop control systems for automated manufacturing services that are capable of addressing both data integration and semantic interoperability issues, as well as monitoring and decision…

Artificial Intelligence · Computer Science 2022-10-11 Massimo Carraturo , Andrea Mazzullo

Competency question (CQ) elicitation represents a critical but resource-intensive bottleneck in ontology engineering. This foundational phase is often hampered by the communication gap between domain experts, who possess the necessary…

Clinical Practice Guidelines (CPGs) for cancer diseases evolve rapidly due to new evidence generated by active research. Currently, CPGs are primarily published in a document format that is ill-suited for managing this developing knowledge.…

Artificial Intelligence · Computer Science 2023-07-21 Pralaypati Ta , Bhumika Gupta , Arihant Jain , Sneha Sree C , Arunima Sarkar , Keerthi Ram , Mohanasankar Sivaprakasam

The use of generative artificial intelligence (AI) models is becoming ubiquitous in many fields. Though progress continues to be made, general purpose large language AI models (LLM) show a tendency to deliver creative answers, often called…

Molecular Networks · Quantitative Biology 2025-07-08 Pranta Saha , Joyce Reimer , Brook Byrns , Connor Burbridge , Neeraj Dhar , Jeffrey Chen , Steven Rayan , Gordon Broderick

The International Classification of Diseases (ICD) is an authoritative medical classification system of different diseases and conditions for clinical and management purposes. ICD indexing assigns a subset of ICD codes to a medical record.…

Computation and Language · Computer Science 2024-05-30 Xindi Wang , Robert E. Mercer , Frank Rudzicz

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Multimodal artificial intelligence (AI) systems have the potential to enhance clinical decision-making by interpreting various types of medical data. However, the effectiveness of these models across all medical fields is uncertain. Each…

Accurate International Classification of Diseases (ICD) coding is critical for clinical documentation, billing, and healthcare analytics, yet it remains a labour-intensive and error-prone task. Although large language models (LLMs) show…

Artificial Intelligence · Computer Science 2025-09-24 Hong-Jie Dai , Zheng-Hao Li , An-Tai Lu , Bo-Tsz Shain , Ming-Ta Li , Tatheer Hussain Mir , Kuang-Te Wang , Min-I Su , Pei-Kang Liu , Ming-Ju Tsai

Effective Cyber Threat Intelligence (CTI) relies upon accurately structured and semantically enriched information extracted from cybersecurity system logs. However, current methodologies often struggle to identify and interpret malicious…

Cryptography and Security · Computer Science 2026-04-28 Luca Cotti , Anisa Rula , Devis Bianchini , Federico Cerutti

This paper presents an advanced search engine prototype for bibliography retrieval developed within the CHRONIOUS European IP project of the seventh Framework Program (FP7). This search engine is specifically targeted to clinicians and…

Generative artificial intelligence (AI), exemplified by the release of GPT-3.5 in 2022, has significantly advanced the potential applications of large language models (LLMs), including in the realms of ontology development and knowledge…

Databases · Computer Science 2025-10-24 Carter Benson , Alec Sculley , Austin Liebers , John Beverley

The incorporation of Artificial Intelligence (AI) models into various optimization systems is on the rise. Yet, addressing complex urban and environmental management problems normally requires in-depth domain science and informatics…

Artificial Intelligence · Computer Science 2024-09-10 Jose Tupayachi , Haowen Xu , Olufemi A. Omitaomu , Mustafa Can Camur , Aliza Sharmin , Xueping Li

The adoption of large language models (LLMs) to assist clinicians has attracted remarkable attention. Existing works mainly adopt the close-ended question-answering (QA) task with answer options for evaluation. However, many clinical…

Biomedical knowledge graphs (KGs) are widely used across research and translational settings, yet their design decisions and implementation are often opaque. Unlike ontologies that more frequently adhere to established creation principles,…

The previously introduced Modular Ontology Modeling methodology (MOMo) attempts to mimic the human analogical process by using modular patterns to assemble more complex concepts. To support this, MOMo organizes organizes ontology design…

Artificial Intelligence · Computer Science 2024-03-01 Andrew Eells , Brandon Dave , Pascal Hitzler , Cogan Shimizu

Information retrieval from distributed heterogeneous data sources remains a challenging issue. As the number of data sources increases more intelligent retrieval techniques, focusing on information content and semantics, are required.…

Databases · Computer Science 2007-07-06 K. Munir , M. Odeh , R. McClatchey , S. Khan , I. Habib

State-of-the-art task-oriented dialogue systems typically rely on task-specific ontologies for fulfilling user queries. The majority of task-oriented dialogue data, such as customer service recordings, comes without ontology and annotation.…

Computation and Language · Computer Science 2025-03-10 Renato Vukovic , David Arps , Carel van Niekerk , Benjamin Matthias Ruppik , Hsien-Chin Lin , Michael Heck , Milica Gašić
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