Related papers: Longest common subsequences in sets of words

Sharpening (a particular case of) a result of Szemeredi and Vu and extending earlier results of Sarkozy and ourselves, we find, subject to some technical restrictions, a sharp threshold for the number of integer sets needed for their sumset…

This paper reformulates the problem of finding a longest common increasing subsequence of the two given input sequences in a very succinct way. An extremely simple linear space algorithm based on the new formula can find a longest common…

We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…

In this note, we first introduce a new problem called the longest common subsequence and substring problem. Let $X$ and $Y$ be two strings over an alphabet $\Sigma$. The longest common subsequence and substring problem for $X$ and $Y$ is to…

The recently introduced longest common substring with $k$-mismatches ($k$-LCF) problem is to find, given two sequences $S_1$ and $S_2$ of length $n$ each, a longest substring $A_1$ of $S_1$ and $A_2$ of $S_2$ such that the Hamming distance…

The subword complexity of a word $w$ over a finite alphabet $\mathcal{A}$ is a function that assigns for each positive integer $n$, the number of distinct subwords of length $n$ in $w$. The subword complexity of a word is a good measure of…

The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive…

We present the first $\mathrm{o}(n)$-space polynomial-time algorithm for computing the length of a longest common subsequence. Given two strings of length $n$, the algorithm runs in $\mathrm{O}(n^{3})$ time with $\mathrm{O}\left(\frac{n…

We find finite-state recurrences to enumerate the words on the alphabet $[n]^r$ which avoid the patterns 123 and $1k(k-1)\dots2$, and, separately, the words which avoid the patterns 1234 and $1k(k-1)\dots2$.

A supersequence over a finite set is a sequence that contains as subsequence all permutations of the set. This paper defines an infinite array of methods to create supersequences of decreasing lengths. This yields the shortest known…

The generalized Kneser graph $K(n,k,t)$ for integers $k>t>0$ and $n>2k-t$ is the graph whose vertices are the $k$-subsets of $\{1,\dots,n\}$ with two vertices adjacent if and only if they share less than $t$ elements. We determine the…

A set X of partial words over a finite alphabet A is called unavoidable if every two-sided infinite word over A has a factor compatible with an element of X. Unlike the case of a set of words without holes, the problem of deciding whether…

Given uniform probability on words of length M=Np+k, from an alphabet of size p, consider the probability that a word (i) contains a subsequence of letters (p, p-1,...,1) in that order and (ii) that the maximal length of the disjoint union…

Let $(X_k)_{k\geq 1}$ and $(Y_k)_{k\geq 1}$ be two independent sequences of i.i.d. random variables, with values in a finite and totally ordered alphabet $\mathcal{A}_m:=\{1,\dots,m\}$, and having respective probability mass function…

The deletion distance between two binary words $u,v \in \{0,1\}^n$ is the smallest $k$ such that $u$ and $v$ share a common subsequence of length $n-k$. A set $C$ of binary words of length $n$ is called a $k$-deletion code if every pair of…

Let $n$ and $k$ be positive integers, and let $F$ be an alphabet of size $n$. A sequence over $F$ of length $m$ is a \emph{$k$-radius sequence} if any two distinct elements of $F$ occur within distance $k$ of each other somewhere in the…

A closed word (a.k.a. periodic-like word or complete first return) is a word whose longest border does not have internal occurrences, or, equivalently, whose longest repeated prefix is not right special. We investigate the structure of…

We study structure of pure morphic and morphic sequences and prove the following result: the subword complexity of arbitrary morphic sequence is either $\Theta(n^{1+1/k})$ for some $k\in\mathbb N$, or is $O(n \log n)$.

Consider two independent random strings having same length and taking values uniformly in a common finite alphabet. We study the order of the variance of the length of the longest common subsequences (LCS) of these strings when long blocks,…

Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…