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The top tree data structure is an important and fundamental tool in dynamic graph algorithms. Top trees have existed for decades, and today serve as an ingredient in many state-of-the-art algorithms for dynamic graphs. In this work, we give…

Data Structures and Algorithms · Computer Science 2023-02-07 Jacob Holm , Eva Rotenberg , Alice Ryhl

We study the persistent homology of both functional data on compact topological spaces and structural data presented as compact metric measure spaces. One of our goals is to define persistent homology so as to capture primarily properties…

Algebraic Topology · Mathematics 2018-11-27 Haibin Hang , Facundo Mémoli , Washington Mio

Mutual learning of a pair of tree parity machines with continuous and discrete weight vectors is studied analytically. The analysis is based on a mapping procedure that maps the mutual learning in tree parity machines onto mutual learning…

Disordered Systems and Neural Networks · Physics 2009-11-07 Michal Rosen-Zvi , Einat Klein , Ido Kanter , Wolfgang Kinzel

Cosmological fluctuations retain a memory of the physics that generated them in their spatial correlations. The strength of correlations varies smoothly as a function of external kinematics, which is encoded in differential equations…

High Energy Physics - Theory · Physics 2024-07-04 Nima Arkani-Hamed , Daniel Baumann , Aaron Hillman , Austin Joyce , Hayden Lee , Guilherme L. Pimentel

Let $\mathcal{H}$ be a complex finite-dimensional or infinite-dimensional separable Hilbert space, $\mathcal{B(H)}$ and $\mathcal{T(H)}$ be the Banach spaces of all bounded linear operators and of all trace class operators on $\mathcal{H},$…

Functional Analysis · Mathematics 2025-12-16 Yuan Li , Shuaijie Wang , Xiaoming Xu

Projection maintenance is one of the core data structure tasks. Efficient data structures for projection maintenance have led to recent breakthroughs in many convex programming algorithms. In this work, we further extend this framework to…

Data Structures and Algorithms · Computer Science 2024-09-09 Zhao Song , Xin Yang , Yuanyuan Yang , Lichen Zhang

Bounded treewidth and Monadic Second Order (MSO) logic have proved to be key concepts in establishing fixed-parameter tractability results. Indeed, by Courcelle's Theorem we know: Any property of finite structures, which is expressible by…

Databases · Computer Science 2008-09-19 Georg Gottlob , Reinhard Pichler , Fang Wei

Natural data offer a hard challenge to data analysis. One set of tools is being developed by several teams to face this difficult task: Persistent topology. After a brief introduction to this theory, some applications to the analysis and…

Algebraic Topology · Mathematics 2017-08-21 Massimo Ferri

The stability and ability of an ecosystem to withstand climate change is directly linked to its biodiversity. Dead trees are a key indicator of overall forest health, housing one-third of forest ecosystem biodiversity, and constitute 8%of…

Computer Vision and Pattern Recognition · Computer Science 2021-12-07 Jacquelyn A. Shelton , Przemyslaw Polewski , Wei Yao , Marco Heurich

We show how a few modifications to the red-black trees allow for $O(1)$ worst-case update time (once the position of the inserted or deleted element is known). The resulting structure is based on relaxing some of the properties of the…

Data Structures and Algorithms · Computer Science 2018-04-09 Amr Elmasry , Mostafa Kahla , Fady Ahdy , Mahmoud Hashem

Characterization of joint probability distribution for large networks of random variables remains a challenging task in data science. Probabilistic graph approximation with simple topologies has practically been resorted to; typically the…

Data Structures and Algorithms · Computer Science 2024-04-10 Fereshteh R. Dastjerdi , Liming Cai

Recent studies have actively employed persistent homology (PH), a topological data analysis technique, to analyze the topological information in time series data. Many successful studies have utilized graph representations of time series…

Algebraic Topology · Mathematics 2025-12-15 Eunwoo Heo , Jae-Hun Jung

Visualization in the emerging field of topological data analysis has progressed from persistence barcodes and persistence diagrams to display of two-parameter persistent homology. Although persistence barcodes and diagrams have permitted…

Applications · Statistics 2019-01-08 Raoul R. Wadhwa , Andrew Dhawan , Drew F. K. Williamson , Jacob G. Scott

Finding the shortest-path distance between two arbitrary vertices is an important problem in road networks. Due to real-time traffic conditions, road networks undergo dynamic changes all the time. Current state-of-the-art methods…

Data Structures and Algorithms · Computer Science 2025-01-30 Henning Koehler , Muhammad Farhan , Qing Wang

We study the grokking phenomenon through the lens of topology. Using persistent homology on point clouds derived from the embedding matrices of a range of models trained on modular arithmetic with varying primes, we identify a clear and…

Machine Learning · Computer Science 2026-05-08 Yifan Tang , Qiquan Wang , Inés García-Redondo , Anthea Monod

Depth first search (DFS) tree is a fundamental data structure for solving various problems in graphs. It is well known that it takes $O(m+n)$ time to build a DFS tree for a given undirected graph $G=(V,E)$ on $n$ vertices and $m$ edges. We…

Data Structures and Algorithms · Computer Science 2018-02-08 Surender Baswana , Shreejit Ray Chaudhury , Keerti Choudhary , Shahbaz Khan

In this work we define a novel edit distance for trees considered with some abstract weights on the edges. The metric is driven by the idea of considering trees as topological summaries in the context of persistence and topological data…

Combinatorics · Mathematics 2025-07-25 Matteo Pegoraro

In this paper, we introduce the persistence transformation, a novel methodology in Topological Data Analysis (TDA) for applications in time series data which can be obtained in various areas such as science, politics, economy, healthcare,…

Algebraic Topology · Mathematics 2024-01-31 Gideon Klaila , Anastasios Stefanou , Lena Ranke

A fully threaded tree (FTT) for adaptive refinement of regular meshes is described. By using a tree threaded at all levels, tree traversals for finding nearest neighbors are avoided. All operations on a tree including tree modifications are…

Astrophysics · Physics 2009-10-30 Alexei M. Khokhlov

A function on an algebra is congruence preserving if, for any congruence, it maps pairs of congruent elements onto pairs of congruent elements. We show that on the algebra of binary trees whose leaves are labeled by letters of an alphabet…

Formal Languages and Automata Theory · Computer Science 2024-02-14 Andre Arnold , Patrick Cegielski , Serge Grigorieff , Irene Guessarian