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Although 1-alkanols are widely used as anesthetics and membrane-active agents, the molecular basis of their chain-length-dependent cutoff behavior remains unclear. Here, we perform extensive atomistic molecular dynamics simulations to…

Soft Condensed Matter · Physics 2026-01-27 Anirban Polley

We propose a model that accounts for the budding transition of asymmetric two-component lipid domains, where the two monolayers (leaflets) have different average compositions controlled by independent chemical potentials. Assuming a…

Soft Condensed Matter · Physics 2016-09-16 Jean Wolff , Shigeyuki Komura , David Andelman

Binary mixtures of amphiphiles in solution can self-assemble into a wide range of structures when the two species individually form aggregates of different curvatures. In this paper, we focus on small, spherically-symmetric aggregates in a…

Soft Condensed Matter · Physics 2012-07-02 M. J. Greenall , G. Gompper

Self-assembly dynamics in binary surfactant mixtures and structure changes of lipid vesicles induced by detergent solution are studied using coarse-grained molecular simulations. Disk-shaped micelles, the bicelles, are stabilized by…

Soft Condensed Matter · Physics 2013-01-14 Hiroshi Noguchi

Biomembranes, which are mainly composed of neutral and charged lipids, exhibit a large variety of functional structures and dynamics. Here, we report a coarse-grained molecular dynamics (MD) simulation of the phase separation and…

Soft Condensed Matter · Physics 2016-11-07 Hiroaki Ito , Yuji Higuchi , Naofumi Shimokawa

To explain the details of bilayer vesicle aggregation, we revised the anyon model for lipid domains formation in closed vesicles of lipid-cholesterol system $DPPC/DLPC$/cholesterol, which was measured by Feigenson and Tokumasu (Biophys.…

Soft Condensed Matter · Physics 2007-05-23 L. V. Elnikova

Planar brushes formed by end-grafted semiflexible polyampholyte chains, each chain containing equal number of positively and negatively charged monomers is studied using molecular dynamics simulations. Keeping the length of the chains…

Soft Condensed Matter · Physics 2015-05-13 M. Baratlo , H. Fazli

Using a microfluidic trap, we study the behavior of individual phospholipid vesicles in contact with fatty acids. We show that spontaneous fatty acids insertion inside the bilayer is controlled by the vesicle size, osmotic pressure…

Subcellular Processes · Quantitative Biology 2016-12-14 Julien Dervaux , Vincent Noireaux , Albert Libchaber

A minimalist simulation model for lipid bilayers is presented. Each lipid is represented by a flexible chain of beads in implicit solvent. The hydrophobic effect is mimicked through an intermolecular pair potential localized at the…

Statistical Mechanics · Physics 2009-11-11 Grace Brannigan , Peter F. Philips , Frank L. H. Brown

Circumbinary planets have been observed at orbital radii where binary perturbations may have significant effects on the gas disk structure, on planetesimal velocity dispersion, and on the coupling between turbulence and planetesimals. Here,…

Earth and Planetary Astrophysics · Physics 2015-06-16 Rebecca G. Martin , Philip J. Armitage , Richard D. Alexander

We consider a model of bilayer lipid membrane with bola-lipids. The bola-lipid is modeled by linking tails of the hydrophobic chains in the opposite monolayers within bilayer as a first approximation. A number of thermodynamical…

Biomolecules · Quantitative Biology 2016-02-26 Sergei I. Mukhin , Boris B. Kheyfets

We develop theory and computational methods to investigate particle inclusions embedded within curved lipid bilayer membranes. We consider the case of spherical lipid vesicles where inclusion particles are coupled through (i) intramembrane…

Soft Condensed Matter · Physics 2023-02-28 Jon Karl Sigurdsson , Paul J. Atzberger

The low sliding friction of articular cartilage in the major joints , which is crucial for its homeostasis and for joint health, has been attributed to lipid bilayers forming lubricious boundary layers at its surface. The robustness of such…

Soft Condensed Matter · Physics 2023-09-06 Salome Mielke , Raya Sorkin , Jacob Klein

Atomistic simulations were performed on hydrated model lipid multilayers that are representative of the lipid matrix in the outer skin (stratum corneum). We find that cholesterol transfers easily between adjacent leaflets belonging to the…

Soft Condensed Matter · Physics 2014-10-27 Chinmay Das , Massimo G. Noro , Peter D. Olmsted

Combining extensive molecular dynamics simulations of lipid bilayer systems of varying chemical composition with single-trajectory analyses we systematically elucidate the stochastic nature of the lipid motion. We observe subdiffusion over…

Soft Condensed Matter · Physics 2015-06-11 Jae-Hyung Jeon , Hector Martinez-Seara Monne , Matti Javanainen , Ralf Metzler

Lipid monolayers with phase coexistence are a frequently used model for lipid membranes. In these systems, domains of the liquid-condensed phase always present size polydispersity. However, very few theoretical works consider size…

Biological Physics · Physics 2023-05-18 Elena Rufeil Fiori , Adolfo J. Banchio

The study of interactions between biomimetic membranes and micron-sized particles is crucial for understanding various biological processes. Here, we control microparticle spontaneous engulfment by giant lipid vesicles by tuning particle…

Soft Condensed Matter · Physics 2025-01-22 Clément Marque , Gaetano D'Avino , Domenico Larobina , Aude Michel , Ali Abou-Hassan , Antonio Stocco

We present a minimal model for simulating dynamics of assorted lipid assemblies in a computationally efficient manner. Our model is particle-based and consists of coarse-grained beads put together on a modular platform to give generic…

Chemical Physics · Physics 2019-10-15 John M. A. Grime , Jesper J. Madsen

Simulations of the effects of stellar fly-bys on planetary systems in star-forming regions show a strong dependence on subtle variations in the initial spatial and kinematic substructure of the regions. For similar stellar densities, the…

Solar and Stellar Astrophysics · Physics 2023-08-14 Richard J. Parker

We study the kinetics governing the attainment of inter-leaflet domain symmetry in a phase-separating amphiphilic bilayer. "Indirect" inter-leaflet coupling via hydrophobic mismatch can induce an instability towards a metastable pattern of…

Soft Condensed Matter · Physics 2016-04-12 John J. Williamson , Peter D. Olmsted