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Non-equilibrium random fluctuations of non-thermal nature are a salient feature of active matter. In this work, we consider the collective excitations of active systems at high density, focusing on a one-dimensional chain of elastically…

Soft Condensed Matter · Physics 2024-01-17 Umberto Marini Bettolo Marconi , Hartmut Löwen , Lorenzo Caprini

Numerous studies have shown that neuronal responses are modulated by stimulus properties, and also by the state of the local network. However, little is known about how activity fluctuations of neuronal populations modulate the sensory…

Neurons and Cognition · Quantitative Biology 2017-11-07 Iñigo Arandia-Romero , Seiji Tanabe , Jan Drugowitsch , Adam Kohn , Rubén Moreno-Bote

Information of relevance to the organism often is represented by the concentrations of particular molecules inside a cell. As outside observers we can now measure these concentrations precisely, but the cell's own mechanisms must be…

Biological Physics · Physics 2022-12-26 Marianne Bauer , William Bialek

We study by simulation the effect of the diffusive motion of repressor molecules on the noise in mRNA and protein levels in the case of a repressed gene. We find that spatial fluctuations due to diffusion can drastically enhance the noise…

Molecular Networks · Quantitative Biology 2007-05-23 Jeroen S. van Zon , Marco J. Morelli , Sorin Tanase-Nicola , Pieter Rein ten Wolde

We follow the temporal evolution of mesoscopic intensity fluctuations and correlation in strongly localized samples. We find an initial burst in relative transmission fluctuations in random one dimensional (1D) samples due to fluctuations…

Disordered Systems and Neural Networks · Physics 2015-06-03 J. Wang , A. A. Chabanov , D. Y. Lu , Z. Q. Zhang , A. Z. Genack

We study fluctuations in plasmonic electroluminescence at the single-atom limit profiting from the precision of a low-temperature scanning tunneling microscope. First, we investigate the influence of a controlled single-atom transfer on the…

Mesoscale and Nanoscale Physics · Physics 2021-09-23 Anna Rosławska , Pablo Merino , Abhishek Grewal , Christopher C. Leon , Klaus Kuhnke , Klaus Kern

Quantum systems are typically characterized by the inherent fluctuation of their physical observables. Despite this fundamental importance, the investigation of the fluctuations in interacting quantum systems at finite temperature continues…

We consider data losses in a single node of a packet-switched Internet-like network. We employ two distinct models, one with discrete and the other with continuous one-dimensional random walks, representing the state of a queue in a router.…

Networking and Internet Architecture · Computer Science 2008-03-26 I. V. Lerner , I. V. Yurkevich A. S. Stepanenko , C. C. Constantinou

The temporal activity of many biological systems, including neural circuits, exhibits fluctuations simultaneously varying over a large range of timescales. The mechanisms leading to this temporal heterogeneity are yet unknown. Here we show…

Disordered Systems and Neural Networks · Physics 2022-08-03 Merav Stern , Nicolae Istrate , Luca Mazzucato

We consider the velocity fluctuations of a system of particles described by the Inelastic Maxwell Model. The present work extends the methods, previously employed to obtain the one-particle velocity distribution function, to the study of…

Statistical Mechanics · Physics 2009-11-13 G. Costantini , U. Marini Bettolo Marconi , A. Puglisi

Standard results for the fluctuations of thermodynamic quantities are derived under the assumption of sampling identical systems that are in different, not fully equilibrated states. These results apply to fluctuations with time in a…

Mesoscale and Nanoscale Physics · Physics 2015-05-13 R. A. Serota

It is shown that in many-electron systems quantum transfer amplitudes and thus transfer probabilities may be strongly influenced by fast fluctuating fields, in particular, caused by simultaneous electron transfers. Corresponding mutual…

Statistical Mechanics · Physics 2007-05-23 Yu. E. Kuzovlev

Thermodynamic bulk measurements of binding reactions critically rely on the validity of the law of mass action and the assumption of a dilute solution. Yet important biological systems such as allosteric ligand-receptor binding,…

Biological Physics · Physics 2017-03-31 Joan Camunas-Soler , Anna Alemany , Felix Ritort

Optical tweezers allow the measurement of fluctuations at the nano-scale, in particular fluctuations in the end-to-end distance in single molecules. Fluctuation spectra can yield valuable information, but they can easily be contaminated by…

Biological Physics · Physics 2015-09-30 Marco Ribezzi-Crivellari , Anna Alemany , Felix Ritort

Order parameter fluctuations (the largest cluster size distribution) are studied within a three-dimensional bond percolation model on small lattices. Cumulant ratios measuring the fluctuations exhibit distinct features near the percolation…

Nuclear Theory · Physics 2007-05-23 Janusz Brzychczyk

We present a theoretical investigation of thermal fluctuation statistics in a molecular motor. Energy transfer in the motor is described using a multidimensional discrete master equation with nearest-neighbor hopping. In this theory, energy…

Statistical Mechanics · Physics 2014-01-07 K. J. Challis , M. W. Jack

A common model of stochastic auto-regulatory gene expression describes promoter switching via cooperative protein binding, effective protein production in the active state and dilution of proteins. Here we consider an extension of this…

Subcellular Processes · Quantitative Biology 2020-04-07 James Holehouse , Abhishek Gupta , Ramon Grima

By combining aspects of the coherent and self intermediate scattering functions, measured by dynamical light scattering on a suspension of hard sphere-like particles, we show that the arrest of particle number density fluctuations spreads…

Soft Condensed Matter · Physics 2015-05-13 W. van Megen , V. A. Martinez , G. Bryant

We present a method to quantify spatial fluctuations of the substitution rate on different length scales throughout genomes of eukaryotes. The fluctuations on large length scales are found to be predominantly a consequence of a…

Genomics · Quantitative Biology 2009-11-10 H. H. von Grünberg , M. Kollmann

A dynamical mean-field theory is developed to analyze stochastic single-cell dynamics of gene expression. By explicitly taking account of nonequilibrium and nonadiabatic features of the DNA state fluctuation, two-time correlation functions…

Molecular Networks · Quantitative Biology 2009-11-13 Yurie Okabe , Yuu Yagi , Masaki Sasai