Related papers: The "Runs" Theorem
We study algorithms for solving three problems on strings. The first one is the Most Frequently String Search Problem. The problem is the following. Assume that we have a sequence of $n$ strings of length $k$. The problem is finding the…
The linear complexity of a sequence $s$ is one of the measures of its predictability. It represents the smallest degree of a linear recursion which the sequence satisfies. There are several algorithms to find the linear complexity of a…
The distributions of the $m$-th longest runs of multivariate random sequences are considered. For random sequences made up of $k$ kinds of letters, the lengths of the runs are sorted in two ways to give two definitions of run length…
Words are sequences of letters over a finite alphabet. We study two intimately related topics for this object: quasi-randomness and limit theory. With respect to the first topic we investigate the notion of uniform distribution of letters…
The lonely runner conjecture of Wills and Cusick asserts that if $n$ runners with distinct constant speeds run around a a circular unit length track, starting at a common time and place, then each runner will at some time be separated by a…
We report (to our knowledge) the first evaluation of Constraint Satisfaction as a computational framework for solving closest string problems. We show that careful consideration of symbol occurrences can provide search heuristics that…
Rich words are characterized by containing the maximum possible number of distinct palindromes. Several characteristic properties of rich words have been studied; yet the analysis of repetitions in rich words still involves some interesting…
RRULES is presented as an improvement and optimization over RULES, a simple inductive learning algorithm for extracting IF-THEN rules from a set of training examples. RRULES optimizes the algorithm by implementing a more effective mechanism…
A longest repeat query on a string, motivated by its applications in many subfields including computational biology, asks for the longest repetitive substring(s) covering a particular string position (point query). In this paper, we extend…
If no optimal propositional proof system exists, we (and independently Pudl\'ak) prove that ruling out length $t$ proofs of any unprovable sentence is hard. This mapping from unprovable to hard-to-prove sentences powerfully translates facts…
In 1999 Lyngs{\o} and Pedersen proposed a conjecture stating that every binary circular word of length $n$ with equal number of zeros and ones has an antipalindromic linear subsequence of length at least $\frac{2}{3}n$. No progress over a…
We study sketching and streaming algorithms for the Longest Common Subsequence problem (LCS) on strings of small alphabet size $|\Sigma|$. For the problem of deciding whether the LCS of strings $x,y$ has length at least $L$, we obtain a…
We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of…
On the set of positive integers, we consider the iterative process that maps $n$ to either $\frac{3n+1}{2}$ or $\frac{n}{2}$ depending on the parity of $n$. The Collatz conjecture states that all such sequences eventually enter the trivial…
We combinatorially prove that the number $R(n,k)$ of permutations of length $n$ having $k$ runs is a log-concave sequence in $k$, for all $n$. We also give a new combinatorial proof for the log-concavity of the Eulerian numbers.
In this paper we present two algorithms for the following problem: given a string and a rational $e > 1$, detect in the online fashion the earliest occurrence of a repetition of exponent $\ge e$ in the string. 1. The first algorithm…
We study the problem of computing a longest increasing subsequence in a sequence $S$ of $n$ distinct elements in the presence of persistent comparison errors. In this model, every comparison between two elements can return the wrong result…
We consider the longest common subsequence problem in the context of subsequences with gap constraints. In particular, following Day et al. 2022, we consider the setting when the distance (i. e., the gap) between two consecutive symbols of…
In this paper, sequences of trials having three outcomes are studied. The outcomes are labelled as success, failure of type I and failure of type II. A run is called at most 1+1 contaminated, if it contains at most 1 failure of type I and…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…