Related papers: The "Runs" Theorem
We consider the NP-hard problem of finding a spanning tree with a maximum number of internal vertices. This problem is a generalization of the famous Hamiltonian Path problem. Our dynamic-programming algorithms for general and…
Determining whether an unordered collection of overlapping substrings (called shingles) can be uniquely decoded into a consistent string is a problem that lies within the foundation of a broad assortment of disciplines ranging from…
In 1999, Jacobson and Lehel conjectured that for $k \geq 3$, every $k$-regular Hamiltonian graph has cycles of at least linearly many different lengths. This was further strengthened by Verstra\"{e}te, who asked whether the regularity can…
We introduce Flashback, a reversible string decomposition that repeatedly peels the maximal leading and trailing character runs from a sentinel-wrapped input, recording each pair as one bilateral token. Decomposition and reconstruction both…
We introduce an algorithm for the uniform generation of infinite traces, i.e., infinite words up to commutation of some letters. The algorithm outputs on-the-fly approximations of a theoretical infinite trace, the latter being distributed…
Assume that for some $\alpha<1$ and for all nutural $n$ a set $F_n$ of at most $2^{\alpha n}$ "forbidden" binary strings of length $n$ is fixed. Then there exists an infinite binary sequence $\omega$ that does not have (long) forbidden…
In this paper we present algorithms for several string problems in the Congested Clique model. In the Congested Clique model, $n$ nodes (computers) are used to solve some problem. The input to the problem is distributed among the nodes, and…
In the deletion channel, an important problem is to determine the number of subsequences derived from a string $U$ of length $n$ when subjected to $t$ deletions. It is well-known that the number of subsequences in the setting exhibits a…
Motivated by mass-spectrometry protein sequencing, we consider a simply-stated problem of reconstructing a string from the multiset of its substring compositions. We show that all strings of length 7, one less than a prime, or one less than…
It is common to encounter situations where one must solve a sequence of similar computational problems. Running a standard algorithm with worst-case runtime guarantees on each instance will fail to take advantage of valuable structure…
In this paper we study the fundamental problem of maintaining a dynamic collection of strings under the following operations: concat - concatenates two strings, split - splits a string into two at a given position, compare - finds the…
In this paper, we provide an efficient algorithm to construct almost optimal $(k,n,d)$-superimposed codes with runlength constraints. A $(k,n,d)$-superimposed code of length $t$ is a $t \times n$ binary matrix such that any two 1's in each…
We determine the distributions of lengths of runs in random sequences of elements from a totally ordered set (total order) or partially ordered set (partial order). In particular, we produce novel formulae for the expected value, variance,…
A nearly linear recurrence sequence (nlrs) is a complex sequence $(a_n)$ with the property that there exist complex numbers $A_0$,$\ldots$, $A_{d-1}$ such that the sequence $\big(a_{n+d}+A_{d-1}a_{n+d-1}+\cdots +A_0a_n\big)_{n=0}^{\infty}$…
In the first chapter of Shannon's "A Mathematical Theory of Communication," it is shown that the maximum entropy rate of an input process of a constrained system is limited by the combinatorial capacity of the system. Shannon considers…
Repeated recursion unfolding is a new approach that repeatedly unfolds a recursion with itself and simplifies it while keeping all unfolded rules. Each unfolding doubles the number of recursive steps covered. This reduces the number of…
It is a fundamental property of non-letter Lyndon words that they can be expressed as a concatenation of two shorter Lyndon words. This leads to a naive lower bound log_{2}(n)} + 1 for the number of distinct Lyndon factors that a Lyndon…
We study circuit codes with long bit runs (sequences of distinct transitions) and derive a formula for the maximum length for an infinite class of symmetric circuit codes with long bit runs. This formula also results in an improved lower…
Consider words of length $n$. The set of all periods of a word of length $n$ is a subset of $\{0,1,2,\ldots,n-1\}$. However, any subset of $\{0,1,2,\ldots,n-1\}$ is not necessarily a valid set of periods. In a seminal paper in 1981, Guibas…
Given a string $T$ with length $n$ whose characters are drawn from an ordered alphabet of size $\sigma$, its longest Lyndon subsequence is a longest subsequence of $T$ that is a Lyndon word. We propose algorithms for finding such a…