Related papers: An Integer Programming Formulation of the Minimum …
For multiparametric mixed-integer convex programming problems such as those encountered in hybrid model predictive control, we propose an algorithm for generating a feasible partition of a subset of the parameter space. The result is a…
Probing in mixed-integer programming (MIP) is a technique of temporarily fixing variables to discover implications that are useful to branch-and-cut solvers. Such fixing is typically performed one variable at a time -- this paper develops…
This paper presents a novel Integer Programming (IP) approach for discovering the Markov Equivalent Class (MEC) of Bayesian Networks (BNs) through observational data. The MEC-IP algorithm utilizes a unique clique-focusing strategy and…
Maximum Likelihood (ML) decoding is the optimal decoding algorithm for arbitrary linear block codes and can be written as an Integer Programming (IP) problem. Feldman et al. relaxed this IP problem and presented Linear Programming (LP)…
In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for…
The Graphical Traveling Salesperson Problem (GTSP) is the problem of assigning, for a given weighted graph, a nonnegative number $x_e$ each edge $e$ such that the induced multi-subgraph is of minimum weight among those that are spanning,…
In the quadratic minimum spanning tree problem (QMSTP) one wants to find the minimizer of a quadratic function over all possible spanning trees of a graph. We present a formulation of the QMSTP as a mixed-integer semidefinite program…
It is well known that sparse approximation problem is \textsf{NP}-hard under general dictionaries. Several algorithms have been devised and analyzed in the past decade under various assumptions on the \emph{coherence} $\mu$ of the…
The intention of this note is two-fold. First, we study integer optimization problems in standard form defined by $A \in\mathbb{Z}^{m\times{}n}$ and present an algorithm to solve such problems in polynomial-time provided that both the…
In this paper we study the Product Partition Problem (PPP), i.e. we are given a set of $n$ natural numbers represented on $m$ bits each and we are asked if a subset exists such that the product of the numbers in the subset equals the…
In this paper, we consider the computational protein design (CPD) problem, which is usually modeled as a 0/1 programming and is extremely challenging due to its combinatorial properties. We propose an efficient algorithm for solving it.…
In recent years, binary quadratic programming (BQP) has been successively applied to solve several combinatorial optimization problems. We consider in this paper a study of using the BQP model to solve the minimum sum coloring problem…
Finding the most probable (MAP) model in SRL frameworks such as Markov logic and Problog can, in principle, be solved by encoding the problem as a `grounded-out' mixed integer program (MIP). However, useful first-order structure disappears…
Given a set of strings, the shortest common superstring problem is to find the shortest possible string that contains all the input strings. The problem is NP-hard, but a lot of work has gone into designing approximation algorithms for…
Motivated by comparative genomics, Chen et al. [9] introduced the Maximum Duo-preservation String Mapping (MDSM) problem in which we are given two strings $s_1$ and $s_2$ from the same alphabet and the goal is to find a mapping $\pi$…
Typical behavior of the linear programming problem (LP) is studied as a relaxation of the minimum vertex cover problem, which is a type of the integer programming problem (IP). To deal with the LP and IP by statistical mechanics, a…
The partitioning of a system model will condition the structure of the controller as well as its design. In order to partition a system model, one has to know what states and inputs to group together to define subsystem models. For a given…
We consider a discrete optimization formulation for learning sparse classifiers, where the outcome depends upon a linear combination of a small subset of features. Recent work has shown that mixed integer programming (MIP) can be used to…
Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…
In this paper, we consider a generalized longest common subsequence problem with multiple substring exclusion constrains. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a set of $d$ constrains $P=\{P_1,...,P_d\}$ of…