Related papers: Phylogenetic invariants for $\mathbb{Z}_3$ scheme-…
Phylogenetic varieties related to equivariant substitution models have been studied largely in the last years. One of the main objectives has been finding a set of generators of the ideal of these varieties, but this has not yet been…
We determine the three fundamental invariants in the entries of a $3 \times 3 \times 3$ array over $\mathbb{C}$ as explicit polynomials in the 27 variables $x_{ijk}$ for $1 \le i, j, k \le 3$. By the work of Vinberg on $\theta$-groups, it…
Phylogenetic diversity indices are commonly used to rank the elements in a collection of species or populations for conservation purposes. The derivation of these indices is typically based on some quantitative description of the…
Let R be a compact oriented surface of genus g with one boundary component. Homology cylinders over R form a monoid IC into which the Torelli group I of R embeds by the mapping cylinder construction. Two homology cylinders M and M' are said…
For any n>1 we define an isotopy invariant, <Gamma>_n, for a certain set of n-valent ribbon graphs Gamma in R^3, including all framed oriented links. We show that our bracket coincides with the Kauffman bracket for n=2 and with the…
A complete determination of the prime ideals invariant under winding automorphisms in the generic 3 by 3 quantum matrix algebra is obtained. Explicit generating sets consisting of quantum minors are given for all of these primes, thus…
We introduce the package PhylogeneticTrees for Macaulay2 which allows users to compute phylogenetic invariants for group-based tree models. We provide some background information on phylogenetic algebraic geometry and show how the package…
Given a central simple algebra with involution over an arbitrary field, \'etale subalgebras contained in the space of symmetric elements are investigated. The method emphasizes the similarities between the various types of involutions and…
In this paper, we settle a conjecture due to Sturmfels and Uhler concerning generation of the prime ideal of the variety associated to the Gaussian graphical model of any cycle graph. Our methods are general and applicable to a large class…
Trigonometric invariants are defined for each Weyl group orbit on the root lattice. They are real and periodic on the coroot lattice. Their polynomial algebra is spanned by a basis which is calculated by means of an algorithm. The…
We investigate fine Selmer groups for elliptic curves and for Galois representations over a number field. More specifically, we discuss Conjecture A, which states that the fine Selmer group of an elliptic curve over the cyclotomic extension…
We study an important property of shape invariant supersymmetric quantum mechanical systems. Particularly, we demonstrate that each shape invariant supersymmetric system can constitute a $Z_3$-graded topological symmetric algebra. The…
It is shown that a finite group in which more than 3/4 of the elements are involutions must be an elementary abelian 2-group. A group in which exactly 3/4 of the elements are involutions is characterized as the direct product of the…
This thesis develops and expands upon known techniques of mathematical physics relevant to the analysis of the popular Markov model of phylogenetic trees required in biology to reconstruct the evolutionary relationships of taxonomic units…
A skew morphism of a finite group $G$ is an element $\varphi$ of $\mathrm{Sym}(G)$ preserving the identity element of $G$ and having the property that for each $a\in G$ there exists a non-negative integer $i_a$ such that…
We give, in Sections 2 and 3, an english translation of: {\it Classes g\'en\'eralis\'ees invariantes}, J. Math. Soc. Japan, 46, 3 (1994), with some improvements and with notations and definitions in accordance with our book: {\it Class…
Phylogenetic networks can represent evolutionary events that cannot be described by phylogenetic trees, such as hybridization, introgression, and lateral gene transfer. Studying phylogenetic networks under a statistical model of DNA…
An invariant of a model of genus one curve is a polynomial in the coefficients of the model that is stable under certain linear transformations. The classical example of an invariant is the discriminant, which characterizes the singularity…
Let $L$ be an alternating prime non-split link in $S^3$. We use the category of flypes between reduced alternating diagrams for $L$ to classify involutions on $L$. As consequences, we show that the quotient of an alternating periodic link…
We investigate projective varieties which are geometric models of binary symmetric phylogenetic 3-valent trees. We prove that these varieties have Gorenstein terminal singularities (with small resolution) and they are Fano varieties of…