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Deciphering the underpinnings of the dynamical processes leading to information transmission, processing, and storing in the brain is a crucial challenge in neuroscience. An inspiring but speculative theoretical idea is that such dynamics…

Statistical Mechanics · Physics 2023-07-21 Guillermo B. Morales , Serena Di Santo , Miguel A. Muñoz

The asymptotic derivation of a new family of one-dimensional, weakly nonlinear and weakly dispersive equations that model the flow of an ideal fluid in an elastic vessel is presented. Dissipative effects due to the viscous nature of the…

Fluid Dynamics · Physics 2020-02-20 Dimitrios Mitsotakis , Denys Dutykh , Li Qian

Understanding the complex patterns in space-time exhibited by active systems has been the subject of much interest in recent times. Complementing this forward problem is the inverse problem of controlling active matter. Here we use optimal…

Soft Condensed Matter · Physics 2022-10-12 Suraj Shankar , Vidya Raju , L. Mahadevan

We generalize the poissonian evolving random graph model of Bauer and Bernard to deal with arbitrary degree distributions. The motivation comes from biological networks, which are well-known to exhibit non poissonian degree distribution. A…

Statistical Mechanics · Physics 2009-11-07 Stephane Coulomb , Michel Bauer

We study the evolution of a random graph under the constraint that the diameter remain constant as the graph grows. We show that if the graph maintains the form of its link distribution it must be scale-free with exponent between 2 and 3.…

Statistical Mechanics · Physics 2007-05-23 Amit Puniyani , Rajan Lukose

Malfunction of the system which regulates the bloodflow in the brain is a major cause of stroke and dementia, costing many lives and many billions of pounds each year in the UK alone. This regulatory system, known as cerebral…

Tissues and Organs · Quantitative Biology 2016-01-01 Mark Catherall

The prevailing theory for metabolic scaling is based on area-preserved, space-filling fractal vascular networks. However, it's known both theoretically and experimentally that animals' vascular systems obey Murray's cubic branching law.…

Quantitative Methods · Quantitative Biology 2022-05-31 Jinkui Zhao

Intracranial aneurysms remain a major cause of neurological morbidity and mortality worldwide, where rupture risk is tightly coupled to local hemodynamics particularly wall shear stress and oscillatory shear index. Conventional…

We prove that nested canalizing functions are the minimum-sensitivity Boolean functions for any activity ratio and we determine the functional form of this boundary which has a nontrivial fractal structure. We further observe that the…

Molecular Networks · Quantitative Biology 2024-08-14 Hamza Coban

Ensuring the microbiological safety of large, heterogeneous water distribution systems (WDS) typically requires managing appropriate levels of disinfectant residuals including chlorine. WDS include complex fluid interactions that are…

Neural and Evolutionary Computing · Computer Science 2026-04-14 Rivaaj Monsia , Daniel Young , Olivier Francon , Risto Miikkulainen

Many living and physical systems such as cell aggregates, tissues or bacterial colonies behave as unconventional systems of particles that are strongly constrained by volume exclusion and shape interactions. Understanding how these…

Quantitative Methods · Quantitative Biology 2026-05-20 Antoine Diez , Jean Feydy

We review results on the scaling of the optimal path length in random networks with weighted links or nodes. In strong disorder we find that the length of the optimal path increases dramatically compared to the known small world result for…

Disordered Systems and Neural Networks · Physics 2015-06-25 L. A. Braunstein , Z. Wu , Y. Chen , S. V. Buldyrev , S. Sreenivasan , T. Kalisky , R. Cohen , E. Lopez , S. Havlin , H. E. Stanley

The multi-cellular hydrodynamic interactions play a critical role in the phenomenology of blood flow in the microcirculation. A fast algorithm has been developed to simulate large numbers of cells modeled as elastic thin membranes. For red…

Fluid Dynamics · Physics 2008-10-14 Amir H. G. Isfahani , Hong Zhao , Jonathan B. Freund

The process of training an artificial neural network involves iteratively adapting its parameters so as to minimize the error of the network's prediction, when confronted with a learning task. This iterative change can be naturally…

Machine Learning · Computer Science 2024-04-10 Kaloyan Danovski , Miguel C. Soriano , Lucas Lacasa

We derive a mean-field approximation for the macroscopic dynamics of large networks of pulse-coupled theta neurons in order to study the effects of different network degree distributions, as well as degree correlations (assortativity).…

Scale-free and non-computable characteristics of natural networks are found to result from the least-time dispersal of energy. To consider a network as a thermodynamic system is motivated since ultimately everything that exists can be…

General Physics · Physics 2011-06-22 Tuomo Hartonen , Arto Annila

Characterizing the spatio-temporal evolution of networks is a central topic in many disciplines. While network expansion has been studied thoroughly, less is known about how empirical networks behave when shrinking. For transportation…

Physics and Society · Physics 2019-07-23 Arianna Bottinelli , Marco Gherardi , Marc Barthelemy

Majority of Artificial Neural Network (ANN) implementations in autonomous systems use a fixed/user-prescribed network topology, leading to sub-optimal performance and low portability. The existing neuro-evolution of augmenting topology or…

Neural and Evolutionary Computing · Computer Science 2018-07-24 Sharat Chidambaran , Amir Behjat , Souma Chowdhury

Phylogenetic networks are used to represent the evolutionary history of species. They are versatile when compared to traditional phylogenetic trees, as they capture more complex evolutionary events such as hybridization and horizontal gene…

Combinatorics · Mathematics 2023-05-18 Shunsuke Maeda , Yusuke Kaneko , Hideaki Muramatsu , Yukihiro Murakami , Momoko Hayamizu

We study a simplified stochastic model for the vascularization of a growing tumor, incorporating the formation of new blood vessels at the tumor periphery as well as their regression in the tumor center. The resulting morphology of the…

Cell Behavior · Quantitative Biology 2009-09-16 Raja Paul