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Biological networks such as gene regulatory networks possess desirable properties. They are more robust and controllable than random networks. This motivates the search for structural and dynamical features that evolution has incorporated…

Molecular Networks · Quantitative Biology 2024-02-16 Claus Kadelka , David Murrugarra

Complex networks characterized by global transport processes rely on the presence of directed paths from input to output nodes and edges, which organize in characteristic linked components. The analysis of such network-spanning structures…

Disordered Systems and Neural Networks · Physics 2015-05-13 M. Angeles Serrano , Paolo De Los Rios

We study a simple model for a neuron function in a collective brain system. The neural network is composed of uncorrelated random scale-free network for eliminating the degree correlation of dynamical processes. The interaction of neurons…

Statistical Mechanics · Physics 2007-05-23 Kyoung Eun Lee , Jae Woo Lee

We study a mathematical model of biological neuronal networks composed by any finite number $N \geq 2$ of non necessarily identical cells. The model is a deterministic dynamical system governed by finite-dimensional impulsive differential…

Biological Physics · Physics 2013-11-19 Eleonora Catsigeras

The branching geometry of biological transport networks is characterized by a diameter scaling exponent $\alpha$. Two structural attractors compete: impedance matching ($\alpha \sim 2$) for pulsatile flow and viscous-metabolic minimization…

Biological Physics · Physics 2026-03-31 Riccardo Marchesi

In this paper, we are concerned with the simulation of blood flow in microvascular networks and the surrounding tissue. To reduce the computational complexity of this issue, the network structures are modeled by a one-dimensional graph,…

Numerical Analysis · Mathematics 2023-05-01 Ettore Vidotto , Timo Koch , Tobias Köppl , Rainer Helmig , Barbara Wohlmuth

In this paper we investigate networks whose evolution is governed by the interaction of a random assembly process and an optimization process. In the first process, new nodes are added one at a time and form connections to randomly selected…

Disordered Systems and Neural Networks · Physics 2011-05-16 Markus Brede

Many situations in physics, biology, and engineering consist of the transport of some physical quantity through a network of narrow channels. The ability of a network to transport such a quantity in every direction can be described by the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Marc Durand , Denis Weaire

Blood viscosity decreases with shear stress, a property essential for an efficient perfusion of the vascular tree. Shear-thinning is intimately related to the dynamics and mutual interactions of red blood cells (RBCs), the major…

The relation between network structure and dynamics is determinant for the behavior of complex systems in numerous domains. An important long-standing problem concerns the properties of the networks that optimize the dynamics with respect…

Adaptation and Self-Organizing Systems · Physics 2017-12-07 Takashi Nishikawa , Jie Sun , Adilson E. Motter

Despite their claimed biological plausibility, most self organizing networks have strict topological constraints and consequently they cannot take into account a wide range of external stimuli. Furthermore their evolution is conditioned by…

General Physics · Physics 2010-04-26 Ignazio Licata , Luigi Lella

In this work we study the hemodynamics in a stented artery connected either to a collateral artery or to an aneurysmal sac. The blood flow is driven by the pressure drop. Our aim is to characterize the flow-rate and the pressure in the…

Analysis of PDEs · Mathematics 2010-07-07 Vuk Milisic

We analyze the structure of networks minimizing the global resistance to flow (or dissipated energy) with respect to two different constraints: fixed total channel volume and fixed total channel surface area. First, we determine the shape…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Marc Durand

The structure of flow networks determines their function under normal conditions as well as their response to perturbative damage. Brain vasculature often experiences transient or permanent occlusions in the finest vessels, but it is not…

Disordered Systems and Neural Networks · Physics 2019-02-06 Tatyana Gavrilchenko , Eleni Katifori

Network flows often exhibit a hierarchical tree-like structure that can be attributed to the minimisation of dissipation. The common feature of such systems is a single source and multiple sinks (or vice versa). In contrast, here we study…

Tissues and Organs · Quantitative Biology 2020-05-27 Julius B. Kirkegaard , Kim Sneppen

In this work we develop a homogenisation methodology to upscale mathematical descriptions of microcirculatory blood flow from the microscale (where individual vessels are resolved) to the macroscopic (or tissue) scale. Due to the assumed…

Tissues and Organs · Quantitative Biology 2024-01-23 Y. Ben-Ami , B. D. Wood , J. M. Pitt-Francis , P. K. Maini , H. M. Byrne

Why does the mammalian vascular tree maintain a conserved branching exponent $\alpha^* \approx 2.72$ across a $10^7$-fold range in body mass, despite a fundamental shift from viscous to wave-dominated transport? We prove this universality…

Biological Physics · Physics 2026-05-29 Riccardo Marchesi

The development and progression of abdominal aortic aneurysms (AAA) are related to complex flow patterns and wall-shear-driven mechanobiological stimuli, yet the quantitative relationship between aneurysmal geometry and hemodynamics remains…

Coupling hemodynamics with vessel wall growth and remodeling (G&R) is crucial for understanding pathology at distal vasculature to study progression of incurable vascular diseases, such as pulmonary arterial hypertension. The present study…

Biological Physics · Physics 2020-01-15 Vasilina Filonova , Hamidreza Gharahi , Nitesh Nama , Seungik Baek , C. Alberto Figueroa

We review the development of thermodynamic protein hydropathic scaling theory, starting from backgrounds in mathematics and statistical mechanics, and leading to biomedical applications. Darwinian evolution has organized each protein family…

Molecular Networks · Quantitative Biology 2021-05-27 J. C. Phillips
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