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In this work, we investigate the mixing of active scalars in two dimensions by the stirring action of stochastically generated shock waves. We use direct numerical simulations (DNS) of the interaction of shock waves with two non-reacting…

Fluid Dynamics · Physics 2024-08-15 Joaquim P. Jossy , Prateek Gupta

Trigger waves are self-regenerating propagating fronts that emerge from the coupling of nonlinear reaction kinetics and diffusion. In cells, trigger waves coordinate large-scale processes such as mitotic entry and stress responses. Although…

Molecular Networks · Quantitative Biology 2026-03-12 Jianwei Li , Kai Meng , Xuewen Shen , Fangting Li

Spontaneous waves are ubiquitous during early brain development and are hypothesized to drive the development of receptive fields (RFs). Different stages of spontaneous waves in the retina have been observed to coincide with the development…

Neurons and Cognition · Quantitative Biology 2025-05-22 Jennifer Crodelle , Wei P. Dai

Detonation propagation in a compressible medium wherein the energy release has been made spatially inhomogeneous is examined via numerical simulation. The inhomogeneity is introduced via step functions in the reaction progress variable,…

The interplay between the chirality of many biological molecules and the energy injected at small length-scales as the result of biological processes is at the base of the life of the cells. With the aim of unveiling the connection between…

Soft Condensed Matter · Physics 2020-08-18 Livio Nicola Carenza , Giuseppe Gonnella , Davide Marenduzzo , Giuseppe Negro

We aim to understand the formation of abnormal waves of activity from myocardial regions with diminished cell-to-cell coupling. In route to this goal, we studied the behavior of a heterogeneous myocyte network in which a sharp coupling…

Tissues and Organs · Quantitative Biology 2009-11-13 V. N. Biktashev , A. Arutunyan , N. A. Sarvazyan

We present an analytical model for the evolution of extended active galactic nuclei (AGNs) throughout their full lifecycle, including the initial jet expansion, lobe formation, and eventual remnant phases. A particular focus of our…

High Energy Astrophysical Phenomena · Physics 2022-10-26 Ross J. Turner , Patrick M. Yates-Jones , Stanislav S. Shabala , Benjamin Quici , Georgia S. C. Stewart

We demonstrate a superconducting artificial atom with strong unidirectional coupling to a microwave photonic waveguide. Our artificial atom is realized by coupling a transmon qubit to the waveguide at two spatially separated points with…

Quantum Physics · Physics 2022-12-23 Chaitali Joshi , Frank Yang , Mohammad Mirhosseini

Population-wide oscillations are ubiquitously observed in mesoscopic signals of cortical activity. In these network states a global oscillatory cycle modulates the propensity of neurons to fire. Synchronous activation of neurons has been…

Neurons and Cognition · Quantitative Biology 2017-07-04 Tobias Kühn , Moritz Helias

The rising need for hybrid physical platforms has triggered a renewed interest for the development of agile radio-frequency phononic circuits with complex functionalities. The combination of travelling waves with resonant mechanical…

We present a simple model that describes the motion of a single chemotactic cell exposed to a traveling wave of the chemoattractant. The model incorporates two types of responses to stimulation by the chemoattractant, i.e., change in…

Biological Physics · Physics 2011-10-26 Masatomo Iwasa , Ryosuke Ishiwata

The simulation of human neurons and neurotransmission mechanisms has been realized in deep neural networks based on the theoretical implementations of activation functions. However, recent studies have reported that the threshold potential…

Machine Learning · Computer Science 2023-05-11 Kyungsu Lee , Jaeseung Yang , Haeyun Lee , Jae Youn Hwang

Synthetic reverberating activity patterns are experimentally generated by stimulation of a subset of neurons embedded in a spontaneously active network of cortical cells in-vitro. The neurons are artificially connected by means of…

Neurons and Cognition · Quantitative Biology 2012-03-27 Roni Vardi , Avner Wallach , Evi Kopelowitz , Moshe Abeles , Shimon Marom , Ido Kanter

Exploring novel strategies for the regulation of axon growth, we introduce a periodic event-triggered control (PETC) to enhance the practical implementation of the associated PDE backstepping control law. Neurological injuries may impair…

Optimization and Control · Mathematics 2024-05-01 Cenk Demir , Mamadou Diagne , Miroslav Krstic

Wave-exciting is a universal phenomenon in physical and biological excitable systems. Here we show that colloidal systems of Quincke rollers which are driven periodically can condense into active liquids and active crystals, in which waves…

Soft Condensed Matter · Physics 2024-07-30 Meng Fei Zhang , Bao Ying Fan , Zeng Tao Liu , Tian Hui Zhang

Remarkably, the interface of a fluid droplet will produce visible capillary waves when exposed to acoustic waves. For example, a small ($\sim\! 1 \mu$L) sessile droplet will oscillate at a low $\sim\!10^2$~Hz frequency when weakly driven by…

Fluid Dynamics · Physics 2022-12-20 Shuai Zhang , Jeremy Orosco , James Friend

Light interference in strongly disordered photonic media can generate lasers where random modes are amplified in unpredictable way. The ease of fabrication, along with their low coherence caused by multiple small-linewidth peaks, made…

Optics · Physics 2020-07-30 Niccolò Caselli , Antonio Consoli , Angel Maria Mateos , Cefe López

Proliferating cells properly divide into their daughter cells through a process that is mediated by kinetochores, protein-complexes that assemble at the centromere of each sister chromatid. Each kinetochore has to establish a tight bipolar…

Subcellular Processes · Quantitative Biology 2017-06-13 Bashar Ibrahim

Reconstituted nicotinic acetylcholine receptors (nAChRs) exhibit significant gain-of-function upon addition of cholesterol to reconstitution mixtures, and cholesterol affects organization of nAChRs within domain-forming membranes, but…

Subcellular Processes · Quantitative Biology 2018-12-04 Liam Sharp , Reza Salari , Grace Brannigan

We present spatio-temporal characteristics of spreading depolarizations (SD) in two experimental systems: retracting SD wave segments observed with intrinsic optical signals in chicken retina, and spontaneously occurring re-entrant SD waves…