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Based on a biophysical model of retinal Starburst Amacrine Cell (SAC) \cite{karvouniari-gil-etal:19} we analyse here the dynamics of retinal waves, arising during the visual system development. Waves are induced by spontaneous bursting of…

Neurons and Cognition · Quantitative Biology 2019-12-10 Dora Matzakos-Karvouniari , Bruno Cessac , L. Gil

During early development, waves of activity propagate across the retina and play a key role in the proper wiring of the early visual system. During the stage II these waves are triggered by a transient network of neurons, called Starburst…

Neurons and Cognition · Quantitative Biology 2018-12-19 Dora Matzakou-Karvouniari , Lionel Gil , Elaine Orendorff , Olivier Marre , Serge Picaud , Bruno Cessac

In this review paper, the theory of synaptic transmission (ST) was developed and discussed. We used the hypothesis of isomorphism between: (a) the cooperative behavior of mediators --- acetylcholine molecules (ACh) and cholinoreceptors in a…

Biological Physics · Physics 2017-03-31 A. V. Chalyi , A. N. Vasilev , E. V. Zaitseva

Over the brief time intervals available for processing retinal output, roughly 50 to 300 msec, the number of extra spikes generated by individual ganglion cells can be quite variable. Here, computer-generated spike trains were used to…

Neurons and Cognition · Quantitative Biology 2007-09-14 Garrett T. Kenyon

Spiral waves are self-repeating waves that can form in excitable media, propagating outward from their center in a spiral pattern. Spiral waves have been observed in different natural phenomena and have been linked to medical conditions…

Cellular Automata and Lattice Gases · Physics 2020-08-11 Vincent Vangelista , Karl Amjad-Ali , Minhyeok Kwon , Paulo H. Acioli

We consider a model of basic inner retinal connectivity where bipolar and amacrine cells interconnect, and both cell types project onto ganglion cells, modulating their response output to the brain visual areas. We derive an analytical…

Neurons and Cognition · Quantitative Biology 2024-01-10 Evgenia Kartsaki , Gerrit Hilgen , Evelyne Sernagor , Bruno Cessac

We analyse the potential effects of lateral connectivity (amacrine cells and gap junctions) on motion anticipation in the retina. Our main result is that lateral connectivity can-under conditions analysed in the paper-trigger a wave of…

Quantitative Methods · Quantitative Biology 2020-09-07 Selma Souihel , Bruno Cessac

Persistent activity is postulated to drive neural network plasticity and learning. To investigate its underlying cellular mechanisms, we developed a biophysically tractable model that explains the emergence, sustenance, and eventual…

Neurons and Cognition · Quantitative Biology 2009-11-13 Vladislav Volman , Richard Gerkin , Pak-Ming Lau , Eshel Ben-Jacob , Guo-Qiang Bi

In Bhattacharya et al. (Science Advances, 2020), a set of chemical reactions involved in the dynamics of actin waves in cells was studied. Both at the microscopic level, where the individual chemical reactions are directly modelled using…

Analysis of PDEs · Mathematics 2023-02-01 Christian Hamster , Peter van Heijster

One of the most conserved mechanisms for transmission of a nerve pulse across a synapse relies on acetylcholine. Ever since the Nobel-prize winning works of Dale and Loewi, it has been assumed that acetylcholine - subsequent to its action…

Biological Physics · Physics 2015-04-22 Christian Fillafer , Matthias F. Schneider

Spatio-temporal dynamics of excitable media with discrete three-level active centers (ACs) and absorbing boundaries is studied numerically by means of a deterministic three-level model (see S. D. Makovetskiy and D. N. Makovetskii, on-line…

Other Condensed Matter · Physics 2007-05-23 S. D. Makovetskiy

The retina is the entrance of the visual system. Although based on common biophysical principles the dynamics of retinal neurons is quite different from their cortical counterparts, raising interesting problems for modellers. In this paper…

Dynamical Systems · Mathematics 2022-01-20 Bruno Cessac

There are many examples in physics of systems showing rogue wave behaviour, the generation of high amplitude events at low probability. Although initially studied in oceanography, rogue waves have now been seen in many other domains, with…

We investigate the dynamics of stage II retinal waves via a dynamical system, grounded on biophysics, and analysed with bifurcation theory. We show how the nonlinear cells coupling and bifurcation structure explain how waves start,…

Adaptation and Self-Organizing Systems · Physics 2023-08-25 Bruno Cessac , Dora Matzakou-Karvouniari

Excitable media are systems which are at rest in the absence of external input but which respond to a sufficiently strong stimulus by sending a wave of "excitation" across the medium. Examples include cardiac and cortical tissue, and in…

Quantitative Methods · Quantitative Biology 2021-01-01 S. P. Hastings , M. M Sussman

By extending the crude Goldman-Hodgkin-Katz electrodiffusion model for resting-state membrane potentials in perfused giant axons of squid, we reformulate the Hodgkin-Huxley (HH) phenomenological quantitative model to create a new model…

Neurons and Cognition · Quantitative Biology 2020-02-07 P. J. Stiles , C. G. Gray

Prior to the onset of vision, neurons in the developing mammalian retina spontaneously fire in correlated activity patterns known as retinal waves. Experimental evidence suggests that retinal waves strongly influence the emergence of…

Neurons and Cognition · Quantitative Biology 2023-12-06 Andrew Ligeralde , Yilun Kuang , Thomas Edward Yerxa , Miah N. Pitcher , Marla Feller , SueYeon Chung

Cortical spreading depression and spreading depolarization (CSD) are waves of neuronal depolarization that spread across the cortex, leading to a temporary saturation of brain activity. They are associated to various brain disorders such as…

Dynamical Systems · Mathematics 2023-06-16 David Reyner-Parra , Carles Bonet , Teresa M. Seara , Gemma Huguet

Developing networks of neural systems can exhibit spontaneous, synchronous activities called neural bursts, which can be important in the organization of functional neural circuits. Before the network matures, the activity level of a burst…

Neurons and Cognition · Quantitative Biology 2017-05-24 Chih-Hsu Huang , Yu-Ting Huang , Chun-Chung Chen , C. K. Chan

The reaction-diffusion waves of proteins are known to be involved in fundamental cellular functions, such as cell migration, cell division, and vesicular transportation. In some of these phenomena, pattern formation on the membranes is…

Soft Condensed Matter · Physics 2021-07-16 Naoki Tamemoto , Hiroshi Noguchi
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