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Understanding how the structure of community interactions is modified by coevolution is vital for understanding system responses to change at all scales. However, in absence of a group selection process, collective community behaviours…

Populations and Evolution · Quantitative Biology 2015-06-23 Daniel A. Power , Richard A. Watson , Eörs Szathmáry , Rob Mills , Simon T Powers , C Patrick Doncaster , Błażej Czapp

Quantum information science and engineering (QISE) is advancing rapidly, creating an urgent demand for a quantum-literate, technically proficient workforce. Despite this need, quantum education initiatives remain fragmented across regions,…

Recent years have seen many advances in methods for causal structure learning from data. The empirical assessment of such methods, however, is much less developed. Motivated by this gap, we pose the following question: how can one assess,…

Methodology · Statistics 2020-06-30 Marco F. Eigenmann , Sach Mukherjee , Marloes H. Maathuis

The infrastructure upon which the functioning of society depends is composed of complex ecosystems of systems. Consequently, we must reason about the properties of such ecosystems, which requires that we construct models of them. There are…

Logic in Computer Science · Computer Science 2024-11-15 Didier Galmiche , Timo Lang , David Pym

Numerous cellular functions rely on protein$\unicode{x2013}$protein interactions. Efforts to comprehensively characterize them remain challenged however by the diversity of molecular recognition mechanisms employed within the proteome. Deep…

Biomolecules · Quantitative Biology 2023-12-08 Julia R. Rogers , Gergő Nikolényi , Mohammed AlQuraishi

Human beings learn causal models and constantly use them to transfer knowledge between similar environments. We use this intuition to design a transfer-learning framework using object-oriented representations to learn the causal…

Machine Learning · Computer Science 2020-07-21 Purva Pruthi , Javier González , Xiaoyu Lu , Madalina Fiterau

A fundamental challenge in developing data-driven approaches to ecological systems for tasks such as state estimation and prediction is the paucity of the observational or measurement data. For example, modern machine-learning techniques…

Quantitative Methods · Quantitative Biology 2024-10-11 Zheng-Meng Zhai , Bryan Glaz , Mulugeta Haile , Ying-Cheng Lai

Scientists investigate the dynamics of complex systems with quantitative models, employing them to synthesize knowledge, to explain observations, and to forecast future system behavior. Complete specification of systems is impossible, so…

Quantitative Methods · Quantitative Biology 2007-05-23 S. R. Borrett , W. Bridewell , P. Langely , K. R. Arrigo

Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale simulations. Whereas traditional models focus on the structure…

Other Quantitative Biology · Quantitative Biology 2024-11-25 Eran Agmon

The quality and correct functioning of software components embedded in electronic systems are of utmost concern especially for safety and mission-critical systems. Model-based testing and formal verification techniques can be employed to…

Formal Languages and Automata Theory · Computer Science 2019-01-08 Shahbaz Ali , Hailong Sun , Yongwang Zhao

The representation of the personal context is complex and essential to improve the help machines can give to humans for making sense of the world, and the help humans can give to machines to improve their efficiency. We aim to design a…

Artificial Intelligence · Computer Science 2021-08-19 Fausto Giunchiglia , Marcelo Rodas Britez , Andrea Bontempelli , Xiaoyue Li

While modern deep networks have demonstrated remarkable versatility, their training dynamics remain poorly understood--often driven more by empirical tweaks than architectural insight. This paper investigates how internal structural choices…

Machine Learning · Computer Science 2025-08-26 Saleh Nikooroo , Thomas Engel

Biological systems are generally complicated and/or complex. In the former approach, one sets up a model with a large number of parameters to describe the system in detail. The latter approach focuses on understanding the universal aspects…

Biological Physics · Physics 2026-03-19 Kunihiko Kaneko

This paper investigates the inherent knowledge in language models from the perspective of epistemological holism. The purpose of this paper is to explore whether LLMs exhibit characteristics consistent with epistemological holism. These…

Computation and Language · Computer Science 2024-03-20 Minsu Kim , James Thorne

E-learning systems are capable of providing more adaptive and efficient learning experiences for students than the traditional classroom setting. A key component of such systems is the learning strategy, the algorithm that designs the…

Machine Learning · Computer Science 2018-10-15 Xiao Li , Hanchen Xu , Jinming Zhang , Hua-hua Chang

Lack of methodical support, low level of teachers' awareness of existing effective teaching technologies such as computer modeling does not allow students to form their own individual trajectory for development as well as their competence…

Physics Education · Physics 2020-05-18 Svitlana H. Lytvynova

Due to the interdisciplinary nature of complex systems as a field, students studying complex systems at University level have diverse disciplinary backgrounds. This brings challenges (e.g. wide range of computer programming skills) but also…

My system utilizes the outcomes feature found in Moodle and other learning content management systems (LCMSs) to keep track of where students are in terms of what language competencies they have mastered and the competencies they need to…

Computation and Language · Computer Science 2013-06-27 Robert Bishop

Causal structure learning refers to a process of identifying causal structures from observational data, and it can have multiple applications in biomedicine and health care. This paper provides a practical review and tutorial on scalable…

Machine Learning · Computer Science 2023-01-20 Pulakesh Upadhyaya , Kai Zhang , Can Li , Xiaoqian Jiang , Yejin Kim

Rapid development of Internet and information technologies has gifted us with a new and diverse mode of learning known as e-learning. In the current era, e-learning has made rapid, influential, universal, interactive, vibrant, and economic…

Computers and Society · Computer Science 2016-07-06 Nazia Hameed , Maqbool Uddin Shaikh , Fozia Hameed , Azra Shamim
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