English
Related papers

Related papers: A Logical Framework for Systems Biology

200 papers

The formal analysis of automated systems is an important and growing industry. This activity routinely requires new verification frameworks to be developed to tackle new programming features, or new considerations (bugs of interest). Often,…

Logic in Computer Science · Computer Science 2026-02-17 Paul Brunet

Temporal logic is a framework for representing and reasoning about propositions that evolve over time. It is commonly used for specifying requirements in various domains, including hardware and software systems, as well as robotics.…

Computation and Language · Computer Science 2024-06-03 İlker Işık , Ebru Aydin Gol , Ramazan Gokberk Cinbis

Large Language Models (LLMs) excel in complex reasoning tasks but struggle with consistent rule application, exception handling, and explainability, particularly in domains like legal analysis that require both natural language…

Artificial Intelligence · Computer Science 2025-11-11 Albert Sadowski , Jarosław A. Chudziak

Modular verification is a technique used to face the state explosion problem often encountered in the verification of properties of complex systems such as concurrent interactive systems. The modular approach is based on the observation…

Logic in Computer Science · Computer Science 2012-11-20 Peter Drábik , Andrea Maggiolo-Schettini , Paolo Milazzo

The development of intelligent agents, particularly those powered by language models (LMs), has shown a critical role in various environments that require intelligent and autonomous decision-making. Environments are not passive testing…

Artificial Intelligence · Computer Science 2025-10-21 Antonin Sulc , Thorsten Hellert

Rule-based reasoning over natural language input arises in domains where decisions must be auditable and justifiable: clinical protocols specify eligibility criteria in prose, evidence rules define admissibility through textual conditions,…

Artificial Intelligence · Computer Science 2026-01-06 Albert Sadowski , Jarosław A. Chudziak

We study induction on the program structure as a proof method for bisimulation-based compiler correctness. We consider a first-order language with mutually recursive function definitions, system calls, and an environment semantics. The…

Programming Languages · Computer Science 2016-11-30 Sigurd Schneider , Gert Smolka , Sebastian Hack

Conservation laws are an inherent feature in many systems modeling real world phenomena, in particular, those modeling biological and chemical systems. If the form of the underlying dynamical system is known, linear algebra and algebraic…

Numerical Analysis · Mathematics 2024-03-11 Tracey Oellerich , Maria Emelianenko

Temporal logics stands for a widely adopted family of formalisms for the verification of computational devices, enriching propositional logics by operators predicating on the step-wise behaviour of a system. Its quantified extensions allow…

Logic in Computer Science · Computer Science 2022-01-05 Fabio Gadducci , Davide Trotta

We discuss a formal framework for using algebraic structures to model a meta-language that can write, compose, and provide interoperability between abstractions of DSLs. The purpose of this formal framework is to provide a verification of…

Category Theory · Mathematics 2023-03-17 Zachary Flores , Angelo Taranto , Eric Bond

Combined modeling and verification of dynamic systems and the data they operate on has gained momentum in AI and in several application domains. We investigate the expressive yet concise framework of data-aware dynamic systems (DDS),…

Logic in Computer Science · Computer Science 2022-03-16 Paolo Felli , Marco Montali , Sarah Winkler

Dialectical frameworks are a unifying model of formal argumentation, where argumentative relations between arguments are represented by assigning acceptance conditions to atomic arguments. Their generality allow them to cover a number of…

Artificial Intelligence · Computer Science 2024-07-03 Jesse Heyninck , Matthias Knorr , João Leite

Logical frameworks provide natural and direct ways of specifying and reasoning within deductive systems. The logical framework LF and subsequent developments focus on finitary proof systems, making the formalization of circular proof…

Logic in Computer Science · Computer Science 2023-05-11 Zhibo Chen , Frank Pfenning

The use of temporal logics has long been recognised as a fundamental approach to the formal specification and verification of reactive systems. In this paper, we take on the problem of automatically verifying a temporal property, given by a…

Logic in Computer Science · Computer Science 2016-07-18 Tewodros A. Beyene , Corneliu Popeea , Andrey Rybalchenko

Multiple logic-based reconstructions of conceptual data modelling languages such as EER, UML Class Diagrams, and ORM exist. They mainly cover various fragments of the languages and none are formalised such that the logic applies…

Artificial Intelligence · Computer Science 2019-09-20 Pablo Rubén Fillottrani , C. Maria Keet

Modal logics are widely used in multi-agent systems to reason about actions, abilities, norms, or epistemic states. Combined with description logic languages, they are also a powerful tool to formalise modal aspects of ontology-based…

Logic in Computer Science · Computer Science 2023-07-25 Tiziano Dalmonte , Andrea Mazzullo , Ana Ozaki , Nicolas Troquard

Verifying specifications for large-scale control systems is of utmost importance, but can be hard in practice as most formal verification methods can not handle high-dimensional dynamics. Contract theory has been proposed as a modular…

Systems and Control · Electrical Eng. & Systems 2021-11-03 Miel Sharf , Bart Besselink , Karl Henrik Johansson

In this paper, we study model-checking of linear-time properties in multi-valued systems. Safety property, invariant property, liveness property, persistence and dual-persistence properties in multi-valued logic systems are introduced. Some…

Logic in Computer Science · Computer Science 2016-09-27 Yongming Li , Manfred Droste , Lihui Lei

One of the basic frameworks in science views behavioral products as a process within a dynamic system. The mechanism might be seen as a representation of many instances of centralized control in real time. Many real systems, however,…

Dynamical Systems · Mathematics 2019-08-19 Chulwook Park

When identifying electrical, mechanical, or biological systems, parametric continuous-time identification methods can lead to interpretable and parsimonious models when the model structure aligns with the physical properties of the system.…

Systems and Control · Electrical Eng. & Systems 2024-09-26 Rodrigo A. González , Koen Classens , Cristian R. Rojas , James S. Welsh , Tom Oomen