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Accurately estimating the wiring diagram of a brain, known as a connectome, at an ultrastructure level is an open research problem. Specifically, precisely tracking neural processes is difficult, especially across many image slices. Here,…

Computer Vision and Pattern Recognition · Computer Science 2014-05-09 Ayushi Sinha , William Gray Roncal , Narayanan Kasthuri , Jeff W. Lichtman , Randal Burns , Michael Kazhdan

Electron microscopic connectomics is an ambitious research direction with the goal of studying comprehensive brain connectivity maps by using high-throughput, nano-scale microscopy. One of the main challenges in connectomics research is…

Computer Vision and Pattern Recognition · Computer Science 2021-04-14 Tran Minh Quan , David G. C. Hildebrand , Won-Ki Jeong

Fluorescent Neuronal Cells v2 is a collection of fluorescence microscopy images and the corresponding ground-truth annotations, designed to foster innovative research in the domains of Life Sciences and Deep Learning. This dataset…

Recently, leveraging big data in deep learning has led to significant performance improvements, as confirmed in applications like mental state decoding using fMRI data. However, fMRI datasets remain relatively small in scale, and the…

Neurons and Cognition · Quantitative Biology 2024-10-08 Yuto Nishimura , Masataka Sawayama , Ayumu Yamashita , Hideki Nakayama , Kaoru Amano

Resting-state fMRI has become a valuable tool for classifying brain disorders and constructing brain functional connectivity networks by tracking BOLD signals across brain regions. However, existing mod els largely neglect the…

Machine Learning · Computer Science 2025-11-18 Yue Xun , Jiaxing Xu , Wenbo Gao , Chen Yang , Shujun Wang

Transformer structures have been widely used in sequential recommender systems (SRS). However, as user interaction histories increase, computational time and memory requirements also grow. This is mainly caused by the standard attention…

Information Retrieval · Computer Science 2026-05-25 Mengyang Ma , Xiaopeng Li , Wanyu Wang , Zhaocheng Du , Jingtong Gao , Pengyue Jia , Yuyang Ye , Yiqi Wang , Yunpeng Weng , Weihong Luo , Xiao Han , Xiangyu Zhao

Neuron labeling is an approach to visualize the behaviour and respond of a certain neuron to a certain pattern that activates the neuron. Neuron labeling extract information about the features captured by certain neurons in a deep neural…

Artificial Intelligence · Computer Science 2024-01-08 Alfirsa Damasyifa Fauzulhaq , Wahyu Parwitayasa , Joseph Ananda Sugihdharma , M. Fadli Ridhani , Novanto Yudistira

Functional connectivity is a key approach to investigate oscillatory activities of the brain that provides important insights on the underlying dynamic of neuronal interactions and that is mostly applied for brain activity analysis.…

Neurons and Cognition · Quantitative Biology 2022-02-17 Marie-Constance Corsi , Sylvain Chevallier , Fabrizio De Vico Fallani , Florian Yger

A piecewise continuous map for modeling bursting and spiking behaviour of isolated neuron is proposed. The map was created from phenomenological viewpoint. The map demonstrates oscillations, which are qualitatively similar to oscillations…

Chaotic Dynamics · Physics 2007-05-23 K. V. Andreev , L. V. Krasichkov

Reconstructing the intricate local morphology of neurons and their long-range projecting axons can address many connectivity related questions in neuroscience. The main bottleneck in connectomics pipelines is correcting topological errors,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-05 Anna Grim , Jayaram Chandrashekar , Uygar Sumbul

We present a bit encoding scheme for a highly efficient and scalable representation of bosonic Fock number states in the restricted Boltzmann machine neural network architecture. In contrast to common density matrix implementations, the…

Quantum Physics · Physics 2021-06-16 Oliver Kästle , Alexander Carmele

The data-embedding process is one of the bottlenecks of quantum machine learning, potentially negating any quantum speedups. In light of this, more effective data-encoding strategies are necessary. We propose a photonic-based bosonic…

Quantum Physics · Physics 2022-06-24 Beng Yee Gan , Daniel Leykam , Dimitris G. Angelakis

Mapping the connectivity of neurons in the brain (i.e., connectomics) is a challenging problem due to both the number of connections in even the smallest organisms and the nanometer resolution required to resolve them. Because of this,…

Neurons and Cognition · Quantitative Biology 2014-09-08 Ting Zhao , Stephen M Plaza

Fine Grained Visual Categorization (FGVC) remains a challenging task in computer vision due to subtle inter class differences and fragile feature representations. Existing methods struggle in fine grained scenarios, especially when labeled…

Computer Vision and Pattern Recognition · Computer Science 2025-06-30 Mingquan Liu

Fluorescence microscopy allows for a detailed inspection of cells, cellular networks, and anatomical landmarks by staining with a variety of carefully-selected markers visualized as color channels. Quantitative characterization of…

Computer Vision and Pattern Recognition · Computer Science 2021-08-26 Alvaro Gomariz , Tiziano Portenier , Patrick M. Helbling , Stephan Isringhausen , Ute Suessbier , César Nombela-Arrieta , Orcun Goksel

Deducing the structure of neural circuits is one of the central problems of modern neuroscience. Recently-introduced calcium fluorescent imaging methods permit experimentalists to observe network activity in large populations of neurons,…

Applications · Statistics 2011-07-22 Yuriy Mishchencko , Joshua T. Vogelstein , Liam Paninski

Brain tumors show significant health challenges due to their potential to cause critical neurological functions. Early and accurate diagnosis is crucial for effective treatment. In this research, we propose ResLink, a novel deep learning…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Sumedha Arya , Nirmal Gaud

Instance segmentation of neurons in volumetric light microscopy images of nervous systems enables groundbreaking research in neuroscience by facilitating joint functional and morphological analyses of neural circuits at cellular resolution.…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Lisa Mais , Peter Hirsch , Claire Managan , Ramya Kandarpa , Josef Lorenz Rumberger , Annika Reinke , Lena Maier-Hein , Gudrun Ihrke , Dagmar Kainmueller

This study introduces "shortcut routing," a novel routing mechanism in capsule networks that addresses computational inefficiencies by directly activating global capsules from local capsules, eliminating intermediate layers. An…

Computer Vision and Pattern Recognition · Computer Science 2023-07-21 Dang Thanh Vu , Vo Hoang Trong , Yu Gwang-Hyun , Kim Jin-Young

The self-attention mechanism, which equips with a strong capability of modeling long-range dependencies, is one of the extensively used techniques in the sequential recommendation field. However, many recent studies represent that current…

Information Retrieval · Computer Science 2023-05-18 Xinyu Du , Huanhuan Yuan , Pengpeng Zhao , Jianfeng Qu , Fuzhen Zhuang , Guanfeng Liu , Victor S. Sheng
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