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Controlled breakdown has recently emerged as a highly accessible technique to fabricate solid-state nanopores. However, in its most common form, controlled breakdown creates a single nanopore at an arbitrary location in the membrane. Here,…
This paper considers the problem of inferring the structure of a network from indirect observations. Each observation (a "trace") is the unordered set of nodes which are activated along a path through the network. Since a trace does not…
Phosphorene, a 2D allotrope of phosphorus, is technologically very appealing because of its semiconducting properties and narrow band gap. Further reduction of the phosphorene dimensionality may spawn exotic properties of its electronic…
We study the NP-hard Minimum Shared Edges (MSE) problem on graphs: decide whether it is possible to route $p$ paths from a start vertex to a target vertex in a given graph while using at most $k$ edges more than once. We show that MSE can…
A graph $G$ is called self-ordered (a.k.a asymmetric) if the identity permutation is its only automorphism. Equivalently, there is a unique isomorphism from $G$ to any graph that is isomorphic to $G$. We say that $G=(V,E)$ is robustly…
Given a graph $ G $ with $ n $ vertices and a set $ S $ of $ n $ points in the plane, a point-set embedding of $ G $ on $ S $ is a planar drawing such that each vertex of $ G $ is mapped to a distinct point of $ S $. A straight-line…
The characterization of protein-nanoparticle assemblies in solution remains a challenge. We demonstrate a technique based on a graphene microelectrode for structural-functional analysis of model systems composed of nanoparticles enclosed in…
Molecular self-assembly plays a very important role in various aspects of technology as well as in biological systems. Governed by the covalent, hydrogen or van der Waals interactions - self-assembly of alike molecules results in a large…
Recently, one has seen a surge of interest in developing such methods including ones for learning such representations for (undirected) graphs (while preserving important properties). However, most of the work to date on embedding graphs…
We study the following generalization of the Hamiltonian cycle problem: Given integers $a,b$ and graph $G$, does there exist a closed walk in $G$ that visits every vertex at least $a$ times and at most $b$ times? Equivalently, does there…
We study the NP-complete Minimum Shared Edges (MSE) problem. Given an undirected graph, a source and a sink vertex, and two integers p and k, the question is whether there are p paths in the graph connecting the source with the sink and…
DNA-coated particles are promising as building blocks for functional and finite-sized assemblies because they can be programmed with orthogonal interactions owing to the sequence-specific hybridization of DNA strands. To fully exploit this…
We give a deterministic algorithm to construct a graph with no loops (a tree or a forest) whose vertices are the points of a d-dimensional stationary Poisson process S, subset of R^d. The algorithm is independent of the origin of…
Single particle tracking allows probing how biomolecules interact physically with their natural environments. A fundamental challenge when analysing recorded single particle trajectories is the inverse problem of inferring the physical…
We prove that an eulerian graph $G$ admits a decomposition into $k$ closed trails of odd length if and only if and it contains at least $k$ pairwise edge-disjoint odd circuits and $k\equiv |E(G)|\pmod{2}$. We conjecture that a connected…
Consider the family of graphs without $ k $ node-disjoint odd cycles, where $ k $ is a constant. Determining the complexity of the stable set problem for such graphs $ G $ is a long-standing problem. We give a polynomial-time algorithm for…
Biharmonic distance (\bd) is a powerful graph distance metric with many applications, including identifying critical links in road networks and mitigating over-squashing problem in \gnn. However, computing \bd\ is extremely difficult,…
We study the algorithmic complexity of partitioning the vertex set of a given (di)graph into a small number of paths. The Path Partition problem (PP) has been studied extensively, as it includes Hamiltonian Path as a special case. The…
We develop a general theory for a quantum-walk search on a star graph. A star graph has N edges each of which is attached to a central vertex. A graph G is attached to one of these edges, and we would like to find out to which edge it is…
We look at the question of which distance-regular graphs are core-complete, meaning they are isomorphic to their own core or have a complete core. We build on Roberson's homomorphism matrix approach by which method he proved the…