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Stochastic Bloch equations which model the fluorescence of two level molecules and atoms, NMR experiments and Josephson junctions are investigated to illustrate the profound effect of multiplicative noise on the critical frequency of a…

Statistical Mechanics · Physics 2010-03-24 I. Peleg , E. Barkai

Constructing numerical models of noisy partial differential equations is very delicate. Our long term aim is to use modern dynamical systems theory to derive discretisations of dissipative stochastic partial differential equations. As a…

Dynamical Systems · Mathematics 2007-05-23 A. J. Roberts

We study stochastic particle systems made up of heterogeneous units. We introduce a general framework suitable to analytically study this kind of systems and apply it to two particular models of interest in economy and epidemiology. We show…

Soft Condensed Matter · Physics 2013-02-06 Luis F. Lafuerza , Raul Toral

We present a systematic study of moment evolution in multidimensional stochastic difference systems, focusing on characterizing systems whose low-order moments diverge in the neighborhood of a stable fixed point. We consider systems with a…

Mathematical Physics · Physics 2009-11-10 Dennis M. Wilkinson

We consider multiscale stochastic dynamical systems. In this article an \emph{intermediate} reduced model is obtained for a slow-fast system with fast mode driven by white noise. First, the reduced stochastic system on exponentially…

Mathematical Physics · Physics 2009-03-10 W. Wang , A. J. Roberts

Biological processes at the cellular level are stochastic in nature, and the immune response system is no different. Therefore, models that attempt to explain this system need to also incorporate noise or fluctuations that can account for…

Molecular Networks · Quantitative Biology 2021-06-16 Abhilasha Batra , Rati Sharma

We analyze the dynamical evolution of systems which obey simple growth laws, like diffusion limited aggregation or dielectric breakdown. We show that, if the developing patterns is sufficiently complex, a scale invariant noise spectrum is…

Condensed Matter · Physics 2009-10-22 F. Guinea , O. Pla , E. Louis

We propose a new non-equilibrium model for spatial pattern formation on the basis of local information transfer. Unlike standard models of pattern formation it is not based on the Turing instability. Information is transmitted through the…

Statistical Mechanics · Physics 2007-05-23 Thimo Rohlf , Stefan Bornholdt

A formalism is developed which describes the extent to which stochastic oscillations in biochemical models are synchronised. It is based on the calculation of the complex coherence function within the linear noise approximation. The method…

Statistical Mechanics · Physics 2013-07-29 Joseph D. Challenger , Alan J. McKane

Noise play a creative role in the evolution of periodic and complex systems which are essential for continuous performance of the system. The interaction of noise generated within one component of a chaotic system with other component in a…

Chaotic Dynamics · Physics 2019-11-11 A. O. Adelakun , S. T. Ogunjo , I. A. Fuwape

Ordinary differential equation models are used to describe dynamic processes across biology. To perform likelihood-based parameter inference on these models, it is necessary to specify a statistical process representing the contribution of…

Gene expression in cells is stochastic, yet differentiation is robust. We propose a mechanism in which frustrated genes with weakly stable intermediate expression undergo noise-driven switching between basins of attraction, followed by…

Biological Physics · Physics 2026-04-21 Davey Plugers , Kunihiko Kaneko

We consider a stochastic version of the so-called Brusselator - a mathematical model for a two-dimensional chemical reaction network - in which one of its parameters is assumed to vary randomly. It has been suggested via numerical…

Dynamical Systems · Mathematics 2023-05-30 Maximilian Engel , Guillermo Olicón-Méndez

Substantial improvement in accuracy of identified linear time-invariant single-input multi-output (SIMO) dynamical models is possible when the disturbances affecting the output measurements are spatially correlated. Using an orthogonal…

Systems and Control · Computer Science 2015-01-14 Niklas Everitt , Giulio Bottegal , Cristian R. Rojas , Håkan Hjalmarsson

Even in the steady-state, the number of biomolecules in living cells fluctuates dynamically; and the frequency spectrum of this chemical fluctuation carries valuable information about the mechanism and the dynamics of the intracellular…

Biological Physics · Physics 2018-08-21 Sanggeun Song , Gil-Suk Yang , Seong Jun Park , Ji-Hyun Kim , Jaeyoung Sung

We use the stochastic limit method to study long time quantum dynamics of a test particle interacting with a dilute Bose gas. The case of arbitrary form-factors and an arbitrary, not necessarily equilibrium, quasifree low density state of…

Mathematical Physics · Physics 2007-05-23 A. N. Pechen

Giving a convincing experimental evidence of the quantum supremacy over classical simulations is a challenging goal. Noise is considered to be the main problem in such a demonstration, hence it is urgent to understand the effect of noise.…

Quantum Physics · Physics 2022-03-08 Valery Shchesnovich

The transcription factors, such as activators and repressors, can interact with the promoter of gene either in a competitive or non-competitive way. In this paper, we construct a stochastic model with non-competitive transcriptional…

Molecular Networks · Quantitative Biology 2022-05-27 Amit Kumar Das

We present a simple analytical tool which gives an approximate insight into the stationary behavior of nonlinear systems undergoing the influence of a weak and rapid noise from one dominating source, e.g. the kinetic equations describing a…

Quantitative Methods · Quantitative Biology 2008-08-13 Anna Ochab-Marcinek

Intracellular fluctuations, mainly triggered by gene expression, are an inevitable phenomenon observed in living cells. It influences generation of phenotypic diversity in genetically identical cells. Such variation of cellular components…

Molecular Networks · Quantitative Biology 2017-02-08 Alok Kumar Maity , Pinaki Chaudhury , Suman K. Banik