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We consider approaches for controlling the buildup of noise by design of gates for chemical and biomolecular computing, in order to realize stable, scalable networks for multi-step information processing. Solvable rate-equation models are…

Biological Physics · Physics 2011-02-28 Vladimir Privman

The existence and characterisation of noise-driven bifurcations from the spatially homogeneous stationary states of a nonlinear, non-local Fokker--Planck type partial differential equation describing stochastic neural fields is established.…

Analysis of PDEs · Mathematics 2023-04-26 José A. Carrillo , Pierre Roux , Susanne Solem

We quantify the effect of Gaussian white noise on fast--slow dynamical systems with one fast and two slow variables, which display mixed-mode oscillations owing to the presence of a folded-node singularity. The stochastic system can be…

Dynamical Systems · Mathematics 2015-03-06 Nils Berglund , Barbara Gentz , Christian Kuehn

Biological neurons receive multiple noisy oscillatory signals, and their dynamical response to the superposition of these signals is of fundamental importance for information processing in the brain. Here we study the response of neural…

Neurons and Cognition · Quantitative Biology 2017-08-28 Daqing Guo , Matjaz Perc , Yangsong Zhang , Peng Xu , Dezhong Yao

This study is motivated by the question of how singularity formation and other forms of extreme behavior in nonlinear dissipative partial differential equations are affected by stochastic excitations. To address this question we consider…

Numerical Analysis · Mathematics 2022-08-10 Elkin Ramírez , Bartosz Protas

We review models and approaches for error-control in order to prevent the buildup of noise when gates for digital chemical and biomolecular computing based on (bio)chemical reaction processes are utilized to realize stable, scalable…

Soft Condensed Matter · Physics 2011-02-15 Vladimir Privman

A stochastic system where bistability is caused by noise has been recently investigated by Biancalani et al. (PRL 112:038101, 2014). They have computed the mean switching time for such a system using a continuous Fokker-Planck equation…

Statistical Mechanics · Physics 2015-06-23 Bahram Houchmandzadeh , Marcel Vallade

Biochemical processes typically involve many chemical species, some in abundance and some in low molecule numbers. Here we first identify the rate constant limits under which the concentrations of a given set of species will tend to…

Quantitative Methods · Quantitative Biology 2016-01-20 Stephen Smith , Claudia Cianci , Ramon Grima

We investigate the influence of intrinsic noise on stable states of a one-dimensional dynamical system that shows in its deterministic version a saddle-node bifurcation between monostable and bistable behaviour. The system is a modified…

Statistical Mechanics · Physics 2017-05-03 Johannes Falk , Marc Mendler , Barbara Drossel

Changes in a cell's external or internal conditions are usually reflected in the concentrations of the relevant transcription factors. These proteins in turn modulate the expression levels of the genes under their control and sometimes need…

Molecular Networks · Quantitative Biology 2013-08-01 Gasper Tkacik , Curtis G Callan , William Bialek

Noise plays a fundamental role in a wide variety of physical and biological dynamical systems. It can arise from an external forcing or due to random dynamics internal to the system. It is well established that even weak noise can result in…

Analysis of PDEs · Mathematics 2019-08-06 Eric Forgoston , Richard O. Moore

Some systems cannot be predicted by classical theories and it is required the development of combined deterministic and stochastic theories that make used of noise for dynamical prediction. Noise is not always an interfering signal which…

Adaptation and Self-Organizing Systems · Physics 2019-05-14 Alexandra Pinto Castellanos

Stochastic resonance is a non-linear phenomenon, in which the sensitivity of signal detectors can be enhanced by adding random noise to the detector input. Here, we demonstrate that noise can also improve the information flux in recurrent…

Neurons and Cognition · Quantitative Biology 2018-11-30 Patrick Krauss , Karin Prebeck , Achim Schilling , Claus Metzner

We study the flocking and pattern formations of active particles with a Vicsek-like model that includes a configuration dependent noise term. In particular, we couple the strength of the noise with both the local density and orientation of…

Biological Physics · Physics 2017-02-09 Kosuke Matsui , John J. Molina

This paper investigates in detail the effects of noise on the performance of reservoir computing. We focus on an application in which reservoir computers are used to learn the relationship between different state variables of a chaotic…

Neural and Evolutionary Computing · Computer Science 2023-05-10 Chad Nathe , Chandra Pappu , Nicholas A. Mecholsky , Joseph D. Hart , Thomas Carroll , Francesco Sorrentino

Many membrane-bound molecules in cells form small clusters. It has been hypothesized that these clusters convert an analog extracellular signal into a digital intracellular signal and that this conversion increases signaling fidelity.…

Molecular Networks · Quantitative Biology 2019-08-28 Edward Roob , Nicola Trendel , Pieter Rein ten Wolde , Andrew Mugler

The transport of molecules through biological and synthetic nanopores is governed by multiple stochastic processes that lead to noisy, fluctuating currents. Disentangling the characteristics of different noise-generating mechanisms is…

Soft Condensed Matter · Physics 2024-10-03 Stuart F. Knowles , Eleanor K. R. Mackay , Alice L. Thorneywork

We study how stronger noise can enhance the entanglement in inhomogeneously monitored quantum systems. We consider a free fermions model composed of two coupled chains - a system chain and an ancilla chain, each subject to its own different…

Quantum Physics · Physics 2025-02-17 Cristiano Muzzi , Mikheil Tsitsishvili , Giuliano Chiriacò

We study the effects of noise in two models of spiny dendrites. Through the introduction of different types of noise to both the Spike-diffuse-spike (SDS) and Baer-Rinzel (BR) models we investigate the change in behaviour of the travelling…

Dynamical Systems · Mathematics 2015-03-19 Emma J. Coutts , Gabriel J. Lord

We present a class of systems for which the signal-to-noise ratio always increases when increasing the noise and diverges at infinite noise level. This new phenomenon is a direct consequence of the existence of a scaling law for the…

Condensed Matter · Physics 2016-08-15 J. M. G. Vilar , J. M. Rubí
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