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When designing control strategies for an infectious disease it is critical to identify the key pathways of transmission. Data on infected hosts - when they were born, where they lived and with whom they interacted - can help infer sources…

Quantitative Methods · Quantitative Biology 2026-03-27 Anthony J Wood , Aeron R Sanchez , Rowland R Kao

Epidemic containment is a major concern when confronting large-scale infections in complex networks. Many works have been devoted to analytically understand how to restructure the network to minimize the impact of major outbreaks of…

Physics and Society · Physics 2018-12-27 Joan T. Matamalas , Alex Arenas , Sergio Gómez

The dynamics of contact networks and epidemics of infectious diseases often occur on comparable time scales. Ignoring one of these time scales may provide an incomplete understanding of the population dynamics of the infection process. We…

Populations and Evolution · Quantitative Biology 2021-02-09 Luis E C Rocha , Naoki Masuda

We consider an infectious disease spreading along the edges of a network which may have significant clustering. The individuals in the population have heterogeneous infectiousness and/or susceptibility. We define the out-transmissibility of…

Populations and Evolution · Quantitative Biology 2008-05-01 Joel C. Miller

Parameter inference and state estimation in stochastic and partially observed biological systems remain major problems in mathematical biology. In this work, we introduce a two-dimensional lattice graph model for the spread of infectious…

Quantitative Methods · Quantitative Biology 2026-05-29 Ihtisham Ul Haq , Serge Richard

Recent works have shown that exploiting unlabeled data through label propagation can substantially reduce the labeling cost, which has been a critical issue in developing visual recognition models. Yet, how to propagate labels reliably,…

Computer Vision and Pattern Recognition · Computer Science 2020-07-20 Lei Yang , Qingqiu Huang , Huaiyi Huang , Linning Xu , Dahua Lin

We present a thorough inspection of the dynamical behavior of epidemic phenomena in populations with complex and heterogeneous connectivity patterns. We show that the growth of the epidemic prevalence is virtually instantaneous in all…

Disordered Systems and Neural Networks · Physics 2007-05-23 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

The spread of an epidemic is often modeled by an SIR random process on a social network graph. The MinINF problem for optimal social distancing involves minimizing the expected number of infections, when we are allowed to break at most $B$…

Data Structures and Algorithms · Computer Science 2022-02-18 Amy Babay , Michael Dinitz , Aravind Srinivasan , Leonidas Tsepenekas , Anil Vullikanti

We study the diffusion of epidemics on networks that are partitioned into local communities. The gross structure of hierarchical networks of this kind can be described by a quotient graph. The rationale of this approach is that individuals…

Social and Information Networks · Computer Science 2016-01-19 Stefano Bonaccorsi , Stefania Ottaviano , Delio Mugnolo , Francesco De Pellegrini

The spread of an infection on a real-world social network is determined by the interplay of two processes: the dynamics of the network, whose structure changes over time according to the encounters between individuals, and the dynamics on…

Physics and Society · Physics 2015-10-28 Lorenzo Coviello , Massimo Franceschetti , Manuel Garcia-Herranz , Iyad Rahwan

Recent research has focused on the monitoring of global-scale online data for improved detection of epidemics, mood patterns, movements in the stock market, political revolutions, box-office revenues, consumer behaviour and many other…

Social and Information Networks · Computer Science 2012-11-29 Manuel Garcia-Herranz , Esteban Moro Egido , Manuel Cebrian , Nicholas A. Christakis , James H. Fowler

We perform an analytical sensitivity analysis for a model of a continuous-time branching process evolving on a fixed network. This allows us to determine the relative importance of the model parameters to the growth of the population on the…

Physics and Society · Physics 2015-09-08 Sophie Hautphenne , Gautier Krings , Jean-Charles Delvenne , Vincent D. Blondel

Real epidemic spreading networks often composed of several kinds of networks interconnected with each other, and the interrelated networks have the different topologies and epidemic dynamics. Moreover, most human diseases are derived from…

Physics and Society · Physics 2017-06-21 Zhongpu Xu , Xinchu Fu

Human behaviour strongly influences the spread of infectious diseases: understanding the interplay between epidemic dynamics and adaptive behaviours is essential to improve response strategies to epidemics, with the goal of containing the…

Physics and Society · Physics 2024-08-21 Marco Mancastroppa , Alessandro Vezzani , Vittoria Colizza , Raffaella Burioni

We develop a stochastic epidemic model progressing over dynamic networks, where infection rates are heterogeneous and may vary with individual-level covariates. The joint dynamics are modeled as a continuous-time Markov chain such that…

Methodology · Statistics 2021-12-16 Fan Bu , Allison E. Aiello , Alexander Volfovsky , Jason Xu

Epidemic intelligence deals with the detection of disease outbreaks using formal (such as hospital records) and informal sources (such as user-generated text on the web) of information. In this survey, we discuss approaches for epidemic…

Computation and Language · Computer Science 2019-03-15 Aditya Joshi , Sarvnaz Karimi , Ross Sparks , Cecile Paris , C Raina MacIntyre

Identifying the most influential nodes in information networks has been the focus of many research studies. This problem has crucial applications in various contexts, such as controlling the propagation of viruses or rumours in real-world…

Social and Information Networks · Computer Science 2022-08-30 Ahmad Asgharian Rezaei , Justin Munoz , Mahdi Jalili , Hamid Khayyam

Networks - collections of interacting elements or nodes - abound in the natural and manmade worlds. For many networks, complex spatiotemporal dynamics stem from patterns of physical interactions unknown to us. To infer these interactions,…

Quantitative Methods · Quantitative Biology 2015-05-13 Mark A. Kramer , Uri T. Eden , Sydney S. Cash , Eric D. Kolaczyk

Global transport and communication networks enable information, ideas and infectious diseases now to spread at speeds far beyond what has historically been possible. To effectively monitor, design, or intervene in such epidemic-like…

Physics and Society · Physics 2020-02-13 Sam Moore , Tim Rogers

Community detection is one of the most important problems in network analysis. Among many algorithms proposed for this task, methods based on statistical inference are of particular interest: they are mathematically sound and were shown to…

Social and Information Networks · Computer Science 2019-02-25 Liudmila Prokhorenkova , Alexey Tikhonov
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