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The representation of complex systems as networks is inappropriate for the study of certain problems. We show several examples of social, biological, ecological and technological systems where the use of complex networks gives very limited…

Physics and Society · Physics 2013-04-02 Ernesto Estrada , Juan A. Rodriguez-Velazquez

One way of getting a better view of data is using frequent patterns. In this paper frequent patterns are subsets that occur a minimal number of times in a stream of itemsets. However, the discovery of frequent patterns in streams has always…

Artificial Intelligence · Computer Science 2007-05-23 Edgar H. de Graaf , Joost N. Kok , Walter A. Kosters

Complex network theory aims to model and analyze complex systems that consist of multiple and interdependent components. Among all studies on complex networks, topological structure analysis is of the most fundamental importance, as it…

Social and Information Networks · Computer Science 2010-09-15 Bo Yang , Jiming Liu

A hierarchical scheme for clustering data is presented which applies to spaces with a high number of dimension ($N_{_{D}}>3$). The data set is first reduced to a smaller set of partitions (multi-dimensional bins). Multiple clustering…

Data Analysis, Statistics and Probability · Physics 2017-10-16 Kevin McIlhany , Stephen Wiggins

The description of complex configuration is a difficult issue. We present a powerful technique for cluster identification and characterization. The scheme is designed to treat with and analyze the experimental and/or simulation data from…

Statistical Mechanics · Physics 2013-08-29 Guangcai Zhang , Aiguo Xu , Guo Lu , Zeyao Mo

Originally, tangles were invented as an abstract tool in mathematical graph theory to prove the famous graph minor theorem. In this paper, we showcase the practical potential of tangles in machine learning applications. Given a collection…

We propose unsupervised representation learning and feature extraction from dendrograms. The commonly used Minimax distance measures correspond to building a dendrogram with single linkage criterion, with defining specific forms of a level…

Machine Learning · Computer Science 2023-01-02 Morteza Haghir Chehreghani , Mostafa Haghir Chehreghani

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods that, based on the dissimilarity structure, output hierarchical clusters, i.e., a family of nested…

Machine Learning · Computer Science 2016-07-22 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

A hierarchical clustering algorithm based on Gaussian mixture model is presented. The key difference to regular hierarchical mixture models is the ability to store objects in both terminal and nonterminal nodes. Upper levels of the…

Machine Learning · Computer Science 2016-03-29 Łukasz P. Olech , Mariusz Paradowski

The structure of defect clusters formed in a displacement cascade plays a significant role in the micro-structural evolution during irradiation. Molecular dynamics simulations have been widely used to study collision cascades and subsequent…

Computational Physics · Physics 2024-02-02 Utkarsh Bhardwaj , Andrea E. Sand , Manoj Warrier

Many standard structural quantities, such as order parameters and correlation functions, exist for common condensed matter systems, such as spherical and rod-like particles. However, these structural quantities are often insufficient for…

Soft Condensed Matter · Physics 2012-01-18 Aaron S. Keys , Christopher R. Iacovella , Sharon C. Glotzer

We survey the application of a relatively new branch of statistical physics--"community detection"-- to data mining. In particular, we focus on the diagnosis of materials and automated image segmentation. Community detection describes the…

Materials Science · Physics 2017-11-22 Z. Nussinov , P. Ronhovde , Dandan Hu , S. Chakrabarty , M. Sahu , Bo Sun , N. A. Mauro , K. K. Sahu

Graphs are commonly used to represent and visualize causal relations. For a small number of variables, this approach provides a succinct and clear view of the scenario at hand. As the number of variables under study increases, the graphical…

Machine Learning · Statistics 2023-08-16 Santtu Tikka , Jouni Helske , Juha Karvanen

Finding densely connected subsets of vertices in an unsupervised setting, called clustering or community detection, is one of the fundamental problems in network science. The edge clustering approach instead detects communities by…

Social and Information Networks · Computer Science 2026-03-02 Ryan DeWolfe , François Théberge

We develop an algorithm to detect community structure in complex networks. The algorithm is based on spectral methods and takes into account weights and links orientations. Since the method detects efficiently clustered nodes in large…

Disordered Systems and Neural Networks · Physics 2009-11-10 Andrea Capocci , Vito D. P. Servedio , Guido Caldarelli , Francesca Colaiori

In this paper, we consider the problem of exploring structural regularities of networks by dividing the nodes of a network into groups such that the members of each group have similar patterns of connections to other groups. Specifically,…

Physics and Society · Physics 2015-05-30 Hua-Wei Shen , Xue-Qi Cheng , Jia-Feng Guo

This article presents a novel pretopology-based algorithm designed to address the challenges of clustering mixed data without the need for dimensionality reduction. Leveraging Disjunctive Normal Form, our approach formulates customizable…

Machine Learning · Computer Science 2025-12-04 Loup-Noe Levy , Guillaume Guerard , Sonia Djebali , Soufian Ben Amor

Network science has presented community detection as a valuable tool for revealing functional modules in complex systems rooted in the wiring architectures of complex networks. The varying procedures of community detection can produce,…

Physics and Society · Physics 2025-04-11 Karsten N. Economou , Cassie R. Norman , Wendy C. Gentleman

Clustering is a fundamental problem in network analysis that finds closely connected groups of nodes and separates them from other nodes in the graph, while link prediction is to predict whether two nodes in a network are likely to have a…

Social and Information Networks · Computer Science 2022-11-29 Shanfan Zhang , Wenjiao Zhang , Zhan Bu

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht