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Identifying and comparing topological features, particularly cycles, across different topological objects remains a fundamental challenge in persistent homology and topological data analysis. This work introduces a novel framework for…

Quantitative Methods · Quantitative Biology 2025-12-16 Sixtus Dakurah

Hierarchical clustering is a common algorithm in data analysis. It is unique among many clustering algorithms in that it draws dendrograms based on the distance of data under a certain metric, and group them. It is widely used in all areas…

Instrumentation and Methods for Astrophysics · Physics 2022-11-14 Heng Yu , Xiaolan Hou

The information contained in hierarchical topology, intrinsic to many networks, is currently underutilised. A novel architecture is explored which exploits this information through a multiscale decomposition. A dendrogram is produced by a…

Machine Learning · Computer Science 2020-06-24 Alex Lipov , Pietro Liò

It has been hypothesized that some form of "modular" structure in artificial neural networks should be useful for learning, compositionality, and generalization. However, defining and quantifying modularity remains an open problem. We cast…

Machine Learning · Computer Science 2022-06-23 Richard D. Lange , David S. Rolnick , Konrad P. Kording

A clustering algorithm based on the Hausdorff distance is introduced and compared to the single and complete linkage. The three clustering procedures are applied to a toy example and to the time series of financial data. The dendrograms are…

Statistical Finance · Quantitative Finance 2010-01-30 N. Basalto , R. Bellotti , F. De Carlo , P. Facchi , E. Pantaleo , S. Pascazio

This paper presents algorithms for hierarchical, agglomerative clustering which perform most efficiently in the general-purpose setup that is given in modern standard software. Requirements are: (1) the input data is given by pairwise…

Machine Learning · Statistics 2011-09-13 Daniel Müllner

An important issue in clustering concerns the avoidance of false positives while searching for clusters. This work addressed this problem considering agglomerative methods, namely single, average, median, complete, centroid and Ward's…

Machine Learning · Computer Science 2020-06-30 Eric K. Tokuda , Cesar H. Comin , Luciano da F. Costa

Comparison-based learning addresses the problem of learning when, instead of explicit features or pairwise similarities, one only has access to comparisons of the form: \emph{Object $A$ is more similar to $B$ than to $C$.} Recently, it has…

Machine Learning · Computer Science 2023-04-04 Aishik Mandal , Michaël Perrot , Debarghya Ghoshdastidar

In this work, we introduce a novel methodology for divisive hierarchical clustering. Our divisive (``top-down'') approach is motivated by the fact that agglomerative hierarchical clustering (``bottom-up''), which is commonly used for…

Methodology · Statistics 2025-10-07 Jan O. Bauer

Previously, we proposed a physically-inspired method to construct data points into an effective in-tree (IT) structure, in which the underlying cluster structure in the dataset is well revealed. Although there are some edges in the IT…

Machine Learning · Statistics 2015-07-30 Teng Qiu , Yongjie Li

We propose a model-based clustering algorithm for a general class of functional data for which the components could be curves or images. The random functional data realizations could be measured with error at discrete, and possibly random,…

Machine Learning · Statistics 2022-03-14 Steven Golovkine , Nicolas Klutchnikoff , Valentin Patilea

The principle of similarity, or homophily, is often used to explain patterns observed in complex networks such as transitivity and the abundance of triangles (3-cycles). However, many phenomena from division of labor to protein-protein…

Physics and Society · Physics 2022-10-12 Szymon Talaga , Andrzej Nowak

There are hierarchical characteristics in the network and how to effectively reveal the hierarchical characteristics in the network is a problem in the research of network structure. If a node is assigned to the community to which it…

Social and Information Networks · Computer Science 2020-03-06 Shun Fu , Ji Xu

Complex systems are often driven by higher-order interactions among multiple units, naturally represented as hypergraphs. Understanding dependency structures within these hypergraphs is crucial for understanding and predicting the behavior…

Social and Information Networks · Computer Science 2025-05-29 John Hood , Caterina De Bacco , Aaron Schein

Standard approaches to tackle high-dimensional supervised classification problem often include variable selection and dimension reduction procedures. The novel methodology proposed in this paper combines clustering of variables and feature…

Statistics Theory · Mathematics 2018-11-07 Marie Chavent , Robin Genuer , Jerome Saracco

A novel methodology is proposed for clustering multivariate time series data using energy distance defined in Sz\'ekely and Rizzo (2013). Specifically, a dissimilarity matrix is formed using the energy distance statistic to measure…

Methodology · Statistics 2024-03-13 Richard A. Davis , Leon Fernandes , Konstantinos Fokianos

Hierarchical clustering is a popular unsupervised data analysis method. For many real-world applications, we would like to exploit prior information about the data that imposes constraints on the clustering hierarchy, and is not captured by…

Data Structures and Algorithms · Computer Science 2018-07-17 Vaggos Chatziafratis , Rad Niazadeh , Moses Charikar

In recent years, networks with higher-order interactions have emerged as a powerful tool to model complex systems. Comparing these higher-order systems remains however a challenge. Traditional similarity measures designed for pairwise…

Physics and Society · Physics 2026-02-24 Cosimo Agostinelli , Marco Mancastroppa , Alain Barrat

The widespread use of GPS-enabled devices generates voluminous and continuous amounts of traffic data but analyzing such data for interpretable and actionable insights poses challenges. A hierarchical clustering of the trips has many uses…

Databases · Computer Science 2018-10-15 Chia-Tung Kuo , Ian Davidson

This paper describes a new approach to the problem of the structural research of clusters based on the theory of geodetic and k-geodetic graphs. We firmly believe that this same approach can be used when solving problems of correlation…

Discrete Mathematics · Computer Science 2017-07-17 Carlos E. Frasser , George N. Vostrov