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PlayMolecule Viewer is a web-based data visualization toolkit designed to streamline the exploration of data resulting from structural bioinformatics or computer-aided drug design efforts. By harnessing state-of-the-art web technologies…

Biomolecules · Quantitative Biology 2024-01-31 Mariona Torrens-Fontanals , Panagiotis Tourlas , Stefan Doerr , Gianni De Fabritiis

We propose a framework for interactive and explainable machine learning that enables users to (1) understand machine learning models; (2) diagnose model limitations using different explainable AI methods; as well as (3) refine and optimize…

Human-Computer Interaction · Computer Science 2019-10-08 Thilo Spinner , Udo Schlegel , Hanna Schäfer , Mennatallah El-Assady

Just-in-Time (JIT) compilers are used by many modern programming systems in order to improve performance. Bugs in JIT compilers provide exploitable security vulnerabilities and debugging them is difficult as they are large, complex, and…

Programming Languages · Computer Science 2021-07-02 HeuiChan Lim , Stephen Kobourov

Many Formal Languages and Automata Theory courses introduce students to Turing machine extensions. One of the most widely-used extensions endows Turing machines with multiple tapes. Although multitape Turing machines are an abstraction to…

Formal Languages and Automata Theory · Computer Science 2025-08-06 Marco T. Morazán , Oliwia Kempinski , Andrés M. Garced

Although many tools have been presented in the research literature of software visualization, there is little evidence of their adoption. To choose a suitable visualization tool, practitioners need to analyze various characteristics of…

Software Engineering · Computer Science 2019-08-13 Leonel Merino , Ekaterina Kozlova , Oscar Nierstrasz , Daniel Weiskopf

Deep Neural Network(DNN) techniques have been prevalent in software engineering. They are employed to faciliatate various software engineering tasks and embedded into many software applications. However, analyzing and understanding their…

Software Engineering · Computer Science 2019-06-04 Xufan Zhang , Ziyue Yin , Yang Feng , Qingkai Shi , Jia Liu , Zhenyu Chen

We introduce TD-Interpreter, a specialized ML tool that assists engineers in understanding complex timing diagrams (TDs), originating from a third party, during their design and verification process. TD-Interpreter is a visual…

Machine Learning · Computer Science 2025-07-24 Jie He , Vincent Theo Willem Kenbeek , Zhantao Yang , Meixun Qu , Ezio Bartocci , Dejan Ničković , Radu Grosu

Multiverse analysis, a paradigm for statistical analysis that considers all combinations of reasonable analysis choices in parallel, promises to improve transparency and reproducibility. Although recent tools help analysts specify…

Human-Computer Interaction · Computer Science 2023-06-06 Ken Gu , Eunice Jun , Tim Althoff

Intra-device parallelism addresses resource under-utilization in ML inference and training by overlapping the execution of operators with different resource usage. However, its wide adoption is hindered by a fundamental conflict with the…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-22 Yi Pan , Yile Gu , Jinbin Luo , Yibo Wu , Ziren Wang , Hongtao Zhang , Ziyi Xu , Shengkai Lin , Baris Kasikci , Stephanie Wang

Deep learning model design, development, and debugging is a process driven by best practices, guidelines, trial-and-error, and the personal experiences of model developers. At multiple stages of this process, performance and internal model…

Human-Computer Interaction · Computer Science 2024-07-26 Thilo Spinner , Daniel Fürst , Mennatallah El-Assady

Interactive program verification is characterized by iterations of unfinished proof attempts. To support the process of constructing a complete proof, many interactive program verification systems offer a proof scripting language as a…

Logic in Computer Science · Computer Science 2018-04-13 Bernhard Beckert , Sarah Grebing , and Alexander Weigl

Veryl, a hardware description language based on SystemVerilog, offers optimized syntax tailored for logic design, ensuring synthesizability and simplifying common constructs. It prioritizes interoperability with SystemVerilog, allowing for…

Hardware Architecture · Computer Science 2024-11-21 Naoya Hatta , Taichi Ishitani , Ryota Shioya

The use-case diagram is a software artifact. Thus, as with any software artifact, the use-case diagrams change across time through the software development life cycle. Therefore, several versions of the same diagram are existed at distinct…

Visualization onboarding supports users in reading, interpreting, and extracting information from visual data representations. General-purpose onboarding tools and libraries are applicable for explaining a wide range of graphical user…

Explanations for description logic (DL) entailments provide important support for the maintenance of large ontologies. The "justifications" usually employed for this purpose in ontology editors pinpoint the parts of the ontology responsible…

Logic in Computer Science · Computer Science 2022-05-20 Christian Alrabbaa , Franz Baader , Stefan Borgwardt , Raimund Dachselt , Patrick Koopmann , Julián Méndez

Transformer networks have revolutionized NLP representation learning since they were introduced. Though a great effort has been made to explain the representation in transformers, it is widely recognized that our understanding is not…

Computation and Language · Computer Science 2023-04-05 Zeyu Yun , Yubei Chen , Bruno A Olshausen , Yann LeCun

The practical impact of deep learning on complex supervised learning problems has been significant, so much so that almost every Artificial Intelligence problem, or at least a portion thereof, has been somehow recast as a deep learning…

Machine Learning · Statistics 2018-03-19 Housam Khalifa Bashier Babiker , Randy Goebel

A representation invariant is a property that holds of all values of abstract type produced by a module. Representation invariants play important roles in software engineering and program verification. In this paper, we develop a…

Programming Languages · Computer Science 2020-03-30 Anders Miltner , Saswat Padhi , Todd Millstein , David Walker

The reasoning capabilities of Large Language Models (LLMs) have increased greatly over the last few years, as have their size and complexity. Nonetheless, the use of LLMs in production remains challenging due to their unpredictable nature…

Computation and Language · Computer Science 2025-07-21 Nicolò Brunello , Davide Rigamonti , Andrea Sassella , Vincenzo Scotti , Mark James Carman

OnlineProver is an interactive proof assistant tailored for the educational setting. Its main features include a user-friendly interface for editing and checking proofs. The user interface provides feedback directly within the derivation,…