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Most biological systems are formed by component parts that to some degree are inter-related. Groups of parts that are more associated among themselves and are relatively autonomous from others are called modules. One of the consequences of…

Populations and Evolution · Quantitative Biology 2013-08-12 Gabriel Marroig , Diogo Melo , Guilherme Garcia

Planktonic organisms such as copepods sense swimming prey and sinking food particles through the hydrodynamic disturbances they generate. However, because these flow fields are often highly symmetric, they provide little directional…

Biological Physics · Physics 2026-04-14 Tommaso Redaelli , Eva Kanso , Christophe Eloy

Cochlear implants(CIs) are arguably the most successful neural implant, having restored hearing to over one million people worldwide. While CI research has focused on modeling the cochlear activations in response to low-level acoustic…

Neural and Evolutionary Computing · Computer Science 2024-07-31 Cynthia R. Steinhardt , Menoua Keshishian , Nima Mesgarani , Kim Stachenfeld

We report acoustic experiments on foam systems. We have recorded the sound emitted by crackling cells during the collapsing of foams. The sound pattern is then analyzed using classical methods of statistical physics. Fundamental processes…

Statistical Mechanics · Physics 2009-10-31 N. Vandewalle , J. F. Lentz , S. Dorbolo , F. Brisbois

The fast-slow dynamics of an eco-evolutionary system are studied, where we consider the feedback actions of environmental resources that are classified into those that are self-renewing and those externally supplied. We show although these…

Systems and Control · Electrical Eng. & Systems 2022-06-01 Lulu Gong , Ming Cao

We consider the problem of detecting, isolating and classifying elephant calls in continuously recorded audio. Such automatic call characterisation can assist conservation efforts and inform environmental management strategies. In contrast…

Sound · Computer Science 2025-04-03 Christiaan M. Geldenhuys , Thomas R. Niesler

We show that scaling arguments are very useful to analyze the dynamics of periodically modulated noisy systems. Information about the behavior of the relevant quantities, such as the signal-to-noise ratio, upon variations of the noise…

Statistical Mechanics · Physics 2016-08-15 J. M. G. Vilar , J. M. Rubí

The imitation of percussive sounds via the human voice is a natural and effective tool for communicating rhythmic ideas on the fly. Thus, the automatic retrieval of drum sounds using vocal percussion can help artists prototype drum patterns…

Sound · Computer Science 2021-10-19 Alejandro Delgado , SkoT McDonald , Ning Xu , Charalampos Saitis , Mark Sandler

The olfactory system employs responses of an ensemble of odorant receptors (ORs) to sense molecules and to generate olfactory percepts. Here we hypothesized that ORs can be viewed as 3D spatial filters that extract molecular features…

Machine Learning · Computer Science 2024-12-13 Sergey Shuvaev , Khue Tran , Khristina Samoilova , Cyrille Mascart , Alexei Koulakov

Simple models have played an important role in the discussion of foundational issues in statistical mechanics. Among them the spin--echo system is of particular interest since it can be realized experimentally. This has led to inferences…

Statistical Mechanics · Physics 2009-11-10 D. A. Lavis

Human spoken language has long been the subject of scientific investigation, particularly with regard to the mechanisms underpinning speech production. Likewise, the study of animal communications has a substantial literature, with many…

Sound · Computer Science 2025-12-09 Roger K. Moore

Improving the interpretability of deep neural networks has recently gained increased attention, especially when the power of deep learning is leveraged to solve problems in physics. Interpretability helps us understand a model's ability to…

Sound · Computer Science 2023-10-12 Karim Helwani , Erfan Soltanmohammadi , Michael M. Goodwin

Dual-process theories play a central role in both psychology and neuroscience, figuring prominently in fields ranging from executive control to reward-based learning to judgment and decision making. In each of these domains, two mechanisms…

Neurons and Cognition · Quantitative Biology 2023-10-11 Ted Moskovitz , Kevin Miller , Maneesh Sahani , Matthew M. Botvinick

While the animal bioacoustics community at large is collecting huge amounts of acoustic data at an unprecedented pace, processing these data is problematic. Currently in bioacoustics, there is no effective way to achieve high performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-05-06 Peter J. Dugan , Christopher W. Clark , Yann André LeCun , Sofie M. Van Parijs

Preserving biodiversity and ecosystem stability is a challenge that can be pursued through modern statistical mechanics modeling. Here we introduce a variational maximum entropy-based algorithm to evaluate the entropy in a minimal ecosystem…

Biological Physics · Physics 2018-10-17 Mattia Miotto , Lorenzo Monacelli

Monitoring of bird populations has played a vital role in conservation efforts and in understanding biodiversity loss. The automation of this process has been facilitated by both sensing technologies, such as passive acoustic monitoring,…

Machine Learning · Computer Science 2021-08-23 Irina Tolkova , Brian Chu , Marcel Hedman , Stefan Kahl , Holger Klinck

A substantial amount of time and energy has been invested to develop machine vision using connectionist (neural network) principles. Most of that work has been inspired by theories advanced by neuroscientists and behaviorists for how…

Neurons and Cognition · Quantitative Biology 2020-09-01 Ernest Greene

The implementation of deep learning algorithms has brought new perspectives to plankton ecology. Emerging as an alternative approach to established methods, deep learning offers objective schemes to investigate plankton organisms in diverse…

The past decade has witnessed a groundbreaking rise of machine learning for human language analysis, with current methods capable of automatically accurately recovering various aspects of syntax and semantics - including sentence structure…

Background. Organisms use a variety of mechanisms to protect themselves against perturbations. For example, repair mechanisms fix damage, feedback loops keep homeostatic systems at their setpoints, and biochemical filters distinguish signal…

Populations and Evolution · Quantitative Biology 2011-12-14 Steven A. Frank
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