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Time-dependent density functional theory, proposed recently in the context of atomic diffusion and non-equilibrium processes in solids, is tested against Monte Carlo simulation. In order to assess the basic approximation of that theory, the…

Statistical Mechanics · Physics 2009-11-07 M. Kessler , W. Dieterich , H. L. Frisch , J. F. Gouyet , P. Maass

In dynamic force spectroscopy, a (bio-)molecular complex is subjected to a steadily increasing force until the chemical bond breaks. Repeating the same experiment many times results in a broad distribution of rupture forces, whose…

Biological Physics · Physics 2012-03-14 Sebastian Getfert , Peter Reimann

This paper studies the classical problem of detecting the locations of signal occurrences in a one-dimensional noisy measurement. Assuming the signal occurrences do not overlap, we formulate the detection task as a constrained likelihood…

Signal Processing · Electrical Eng. & Systems 2023-02-20 Mordechai Roth , Amichai Painsky , Tamir Bendory

We develop a reduced model for the slow unsteady dynamics of an isotropic chemically active particle near the threshold for spontaneous motion. Building on the steady theory developed in part I of this series, we match a weakly nonlinear…

Soft Condensed Matter · Physics 2023-02-24 Gunnar G. Peng , Ory Schnitzer

The static friction between crystalline surfaces separated by a molecularly thin layer of adsorbed molecules is calculated using molecular dynamics simulations. These molecules naturally lead to a finite static friction that is consistent…

Materials Science · Physics 2009-11-07 Gang He , Mark O. Robbins

We study the real-time dynamics of local occupation numbers in a one-dimensional model of spinless fermions with a random on-site potential for a certain class of initial states. The latter are thermal (mixed or pure) states of the model in…

Statistical Mechanics · Physics 2018-10-09 Jonas Richter , Jacek Herbrych , Robin Steinigeweg

Much of our mechanistic understanding of the functions of biological macromolecules is based on static structural experiments, which can be modelled either as single structures or conformational ensembles. While these provide us with…

Biomolecules · Quantitative Biology 2025-10-02 Daria Gusew , Carl G. Henning Hansen , Kresten Lindorff-Larsen

For nearly three decades, spatial games have produced a wealth of insights to the study of behavior and its relation to population structure. However, as different rules and factors are added or altered, the dynamics of spatial models often…

Computer Science and Game Theory · Computer Science 2021-09-30 Jakob Stenseke

The assumption of no unmeasured confounders is a critical but unverifiable assumption required for causal inference yet quantitative sensitivity analyses to assess robustness of real-world evidence remains underutilized. The lack of use is…

This paper considers the design of a minimax test for two hypotheses where the actual probability densities of the observations are located in neighborhoods obtained by placing a bound on the relative entropy between actual and nominal…

Information Theory · Computer Science 2016-11-18 Bernard C. Levy

The recent availability of huge, many-dimensional data sets, like those arising from genome-wide association studies (GWAS), provides many opportunities for strengthening causal inference. One popular approach is to utilize these…

Machine Learning · Statistics 2020-12-21 Ioan Gabriel Bucur , Tom Claassen , Tom Heskes

From hydrogels and plastics to liquid crystals, soft solids cover a wide array of synthetic and biological materials that play key enabling roles in advanced technologies such as 3D printing, soft robotics, wearable electronics,…

Soft Condensed Matter · Physics 2022-11-15 Surjyasish Mitra , Quoc Vo , Marcus Lin , Tuan Tran

The dynamics of suspended two-dimensional (2D) materials has received increasing attention during the last decade, yielding new techniques to study and interpret the physics that governs the motion of atomically thin layers. This has led to…

Mesoscale and Nanoscale Physics · Physics 2021-09-01 Peter G. Steeneken , Robin J. Dolleman , Dejan Davidovikj , Farbod Alijani , Herre S. J. van der Zant

In the realm of modern autonomous driving, the perception system is indispensable for accurately assessing the state of the surrounding environment, thereby enabling informed prediction and planning. The key step to this system is related…

Computer Vision and Pattern Recognition · Computer Science 2024-08-16 Ziying Song , Lin Liu , Feiyang Jia , Yadan Luo , Guoxin Zhang , Lei Yang , Li Wang , Caiyan Jia

Useful quantum metrology requires nonclassical states with a high particle number and (close to) the optimal exploitation of the state's quantum correlations. Unfortunately, the single-particle detection resolution demanded by conventional…

Quantum Physics · Physics 2017-11-08 Samuel P. Nolan , Stuart S. Szigeti , Simon A. Haine

Many transport processes in nature take place on substrates, often considered as unidimensional lanes. These unidimensional substrates are typically non-static: affected by a fluctuating environment, they can undergo conformational changes.…

Statistical Mechanics · Physics 2013-01-11 Francesco Turci , Andrea Parmeggiani , Estelle Pitard , M. Carmen Romano , Luca Ciandrini

We propose a novel statistical hypothesis testing method for detection of objects in noisy images. The method uses results from percolation theory and random graph theory. We present an algorithm that allows to detect objects of unknown…

Statistics Theory · Mathematics 2013-12-02 Mikhail A. Langovoy , Olaf Wittich

For molecular dynamics simulations of hard particles, we define dynamic neighbors as the distinct particles that collide with a given reference one during a specific time interval. This definition allows us to determine the distribution of…

Most active colloid experiments are quasi-2D. Here a 3D density-matched solution of active particles propelled and aligned with an AC electric field uniquely facilitates measurement of short and long-range particle-wall interactions.…

Soft Condensed Matter · Physics 2025-05-02 Sandeep Ramteke , Jordan Dehmel , Touvia Miloh , Jarrod Schiffbauer , Alicia Boymelgreen

Mathematical models of glucose, insulin, and pancreatic $\beta$-cell mass dynamics are essential for understanding the physiological basis of type 2 diabetes. This paper investigates the Topp model's discrete-time dynamics to represent…

Dynamical Systems · Mathematics 2024-05-02 Z. S. Boxonov , U. A. Rozikov