Related papers: Query Answering in Object Oriented Knowledge Bases…
Objective: Question answering (QA) systems have the potential to improve the quality of clinical care by providing health professionals with the latest and most relevant evidence. However, QA systems have not been widely adopted. This…
The field of single-cell biology is growing rapidly and is generating large amounts of data from a variety of species, disease conditions, tissues, and organs. Coordinated efforts such as CZI CELLxGENE, HuBMAP, Broad Institute Single Cell…
The complexity of human biology and its intricate systems holds immense potential for advancing human health, disease treatment, and scientific discovery. However, traditional manual methods for studying biological interactions are often…
Answer Set Programming (ASP) is a well-known problem solving approach based on nonmonotonic logic programs. HEX-programs extend ASP with external atoms for accessing arbitrary external information, which can introduce values that do not…
Purpose: With advancements in Large Language Models (LLMs) for healthcare, the need arises for competitive open-source models to protect the public interest. This work contributes to the field of open medical LLMs by optimizing key stages…
Answer set programming (ASP) is a logic programming paradigm that can be used to solve complex combinatorial search problems. Aggregates are an ASP construct that plays an important role in many applications. Defining a satisfactory…
Recent progress in logic programming (e.g., the development of the Answer Set Programming paradigm) has made it possible to teach it to general undergraduate and even high school students. Given the limited exposure of these students to…
Answer Set Programming with Quantifiers (ASP(Q)) has been introduced to provide a natural extension of ASP modeling to problems in the polynomial hierarchy (PH). However, ASP(Q) lacks a method for encoding in an elegant and compact way…
Artificial intelligence (AI) techniques are widely applied in the life sciences. However, applying innovative AI techniques to understand and deconvolute biological complexity is hindered by the learning curve for life science scientists to…
While transformers demonstrate impressive performance on many knowledge intensive (KI) tasks, their ability to serve as implicit knowledge bases (KBs) remains limited, as shown on several slot-filling, question-answering (QA), fact…
Answer Set Programming (ASP) is a declarative programming paradigm. The intrinsic complexity of the evaluation of ASP programs makes the development of more effective and faster systems a challenging research topic. This paper reports on…
The ability to understand and generate similes is an imperative step to realize human-level AI. However, there is still a considerable gap between machine intelligence and human cognition in similes, since deep models based on statistical…
Question answering over knowledge bases (KBs) aims to answer natural language questions with factual information such as entities and relations in KBs. Previous methods either generate logical forms that can be executed over KBs to obtain…
Consistent query answering over a database that violates primary key constraints is a classical hard problem in database research that has been traditionally dealt with logic programming. However, the applicability of existing logic-based…
Autonomous business processes (ABPs), i.e., self-executing workflows leveraging AI/ML, have the potential to improve operational efficiency, reduce errors, lower costs, improve response times, and free human workers for more strategic and…
Machine learning is a modern approach to problem-solving and task automation. In particular, machine learning is concerned with the development and applications of algorithms that can recognize patterns in data and use them for predictive…
Answer Set Programming (ASP) is a successful method for solving a range of real-world applications. Despite the availability of fast ASP solvers, computing answer sets demands a very large computational power, since the problem tackled is…
The knowledge base paradigm aims to express domain knowledge in a rich formal language, and to use this domain knowledge as a knowledge base to solve various problems and tasks that arise in the domain by applying multiple forms of…
Tables in scientific papers contain a wealth of valuable knowledge for the scientific enterprise. To help the many of us who frequently consult this type of knowledge, we present Tab2Know, a new end-to-end system to build a Knowledge Base…
Computational models and simulations are not just appealing because of their intrinsic characteristics across spatiotemporal scales, scalability, and predictive power, but also because the set of problems in cancer biomedicine that can be…