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Transcription and translation retrieve and operationalize gene encoded information in cells. These processes are not instantaneous and incur significant delays. In this paper we study Goodwin models of both inducible and repressible operons…
Hyperbolic lattices interpolate between finite-dimensional lattices and Bethe lattices and are interesting in their own right with ordinary percolation exhibiting not one, but two, phase transitions. We study four constraint percolation…
The aim of this paper is to present a modeling for the rheological behavior of simple liquids as a function of the amplitude of the imposed shear stress or strain. The elastic mode theory (Ref. 6) is first generalized to take into account…
The correlated non-equilibrium quantum dynamics following a multiple interaction quench protocol for few-bosonic ensembles confined in finite optical lattices is investigated. The quenches give rise to an interwell tunneling and excite the…
We study the equilibrium and non-equilibrium properties of strongly interacting bosons on a lattice in presence of a random bounded disorder potential. Using a Gutzwiller projected variational technique, we study the equilibrium phase…
The timing of human labor is among the most critical determinants of neonatal survival, yet the mechanisms that govern the transition from uterine quiescence to coordinated contractions remain elusive. Here we present a dynamical-systems…
We present a detailed numerical study of a protocol for momentum-selective transport of a Bose-Einstein condensate (BEC) in a one-dimensional optical lattice, achieving narrow momentum distributions through controlled non-adiabatic…
We revisit the dynamics of a gene repressed by its own protein in the case where the transcription rate does not adapt instantaneously to protein concentration but is a dynamical variable. We derive analytical criteria for the appearance of…
Among the different computational approaches modelling the dynamics of isogenic cell populations, discrete stochastic models can describe with sufficient accuracy the evolution of small size populations. However, for a systematic and…
We perform stability analysis of a kinetic bacterial chemotaxis model of bacterial self-organization, assuming that bacteria respond sharply to chemical signals. The resulting discontinuous tumbling kernel represents the key challenge for…
The dynamical evolution of a Bose-Einstein condensate trapped in a one-dimensional lattice potential is investigated theoretically in the framework of the Bose-Hubbard model. The emphasis is set on the far-from-equilibrium evolution in a…
The volume occupied by unconstrained bacterial DNA in physiological solutions exceeds 1000 times the volume of the cell. Still, it is confined to a well defined region of the cell called the nucleoid, which occupies only a fraction of the…
The response time of physical computational elements is finite, and neurons are no exception. In hierarchical models of cortical networks each layer thus introduces a response lag. This inherent property of physical dynamical systems…
Quantitative characterization of bacterial growth has gathered substantial attention since Monod's pioneering study. Theoretical and experimental work has uncovered several laws for describing the log growth phase, in which the number of…
The analysis of stress response systems in microorganisms can reveal molecular strategies for regulatory control and adaptation. Here, we focus on the Cad module, a subsystem of E. coli's response to acidic stress, which is conditionally…
We experimentally study the transient motion of a colloidal particle actively dragged by an optical trap through different viscoelastic fluids (wormlike micelles, polymer solutions, and entangled $\lambda$-phage DNA). We observe that, after…
Genetic systems with multiple loci can have complex dynamics. For example, mean fitness need not always increase and stable cycling is possible. Here, we study the dynamics of a genetic system inspired by the molecular biology of…
Living cells exhibit a complex organization comprising numerous compartments, among which are RNA- and protein-rich membraneless, liquid-like organelles known as biomolecular condensates. Energy-consuming processes regulate their formation…
The nonlinear decay of oscillations of a liquid column in a U-shaped tube is investigated within the theoretical framework of the projection method formalized by Bongarzone et al. (2021) [1]. Starting from the full hydrodynamic system…
This paper introduces a novel piston-driven apparatus to study the onset of cavitation in an impulsively accelerated liquid column as it compresses a closed gas volume. The experiment is monitored using high-speed videography and…