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Given a labeled graph, the frequent-subgraph mining (FSM) problem asks to find all the $k$-vertex subgraphs that appear with frequency greater than a given threshold. FSM has numerous applications ranging from biology to network science, as…
Let $P$ be a simple polygon with $n$ vertices. For any two points in $P$, the geodesic distance between them is the length of the shortest path that connects them among all paths contained in $P$. Given a set $S$ of $m$ sites being a subset…
The closest point method (Ruuth and Merriman, J. Comput. Phys. 227(3):1943-1961, [2008]) is an embedding method developed to solve a variety of partial differential equations (PDEs) on smooth surfaces, using a closest point representation…
In the non-uniform sparsest cut problem, we are given a supply graph G and a demand graph D, both with the same set of nodes V. The goal is to find a cut of V that minimizes the ratio of the total capacity on the edges of G crossing the cut…
Consider the continuum of points along the edges of a network, i.e., an undirected graph with positive edge weights. We measure distance between these points in terms of the shortest path distance along the network, known as the network…
In a geometric graph, $G$, the \emph{stretch factor} between two vertices, $u$ and $w$, is the ratio between the Euclidean length of the shortest path from $u$ to $w$ in $G$ and the Euclidean distance between $u$ and $w$. The \emph{average…
For a given graph $G$ and a subset of vertices $S$, a \emph{distance preserver} is a subgraph of $G$ that preserves shortest paths between the vertices of $S$. We distinguish between a \emph{subsetwise} distance preserver, which preserves…
In this paper, we present a new method for computing approximate geodesic distances. We introduce the wave method for approximating geodesic distances from a point on a manifold mesh. Our method involves the solution of two linear systems…
Two kinds of approximation algorithms exist for the k-BALANCED PARTITIONING problem: those that are fast but compute unsatisfying approximation ratios, and those that guarantee high quality ratios but are slow. In this paper we prove that…
The graph edit distance is used for comparing graphs in various domains. Due to its high computational complexity it is primarily approximated. Widely-used heuristics search for an optimal assignment of vertices based on the distance…
The problem of how to estimate diffusion on a graph effectively is of importance both theoretically and practically. In this paper, we make use of two widely studied indices, geodesic distance and mean first-passage time ($MFPT$) for random…
The Fr\'echet distance is a distance measure between trajectories in $\Bbb{R}^d$ or walks in a graph $G$. Given constant-time shortest path queries, the Discrete Fr\'echet distance $D_G(P, Q)$ between two walks $P$ and $Q$ can be computed…
For a family of graphs $\mathcal{F}$, Weighted $\mathcal{F}$-Deletion is the problem for which the input is a vertex weighted graph $G=(V,E)$ and the goal is to delete $S\subseteq V$ with minimum weight such that $G\setminus…
As large graph datasets become increasingly common across many fields, sampling is often needed to reduce the graphs into manageable sizes. This procedure raises critical questions about representativeness as no sample can capture the…
Persistence diagrams (PD)s play a central role in topological data analysis. This analysis requires computing distances among such diagrams such as the $1$-Wasserstein distance. Accurate computation of these PD distances for large data sets…
In the Min $k$-Cut problem, input is an edge weighted graph $G$ and an integer $k$, and the task is to partition the vertex set into $k$ non-empty sets, such that the total weight of the edges with endpoints in different parts is minimized.…
For an edge-weighted connected undirected graph, the minimum $k$-way cut problem is to find a subset of edges of minimum total weight whose removal separates the graph into $k$ connected components. The problem is NP-hard when $k$ is part…
The computation of geodesic distances is an important research topic in Geometry Processing and 3D Shape Analysis as it is a basic component of many methods used in these areas. In this work, we present a minimalistic parallel algorithm…
Range-aggregate query is an important type of queries with numerous applications. It aims to obtain some structural information (defined by an aggregate function $F(\cdot)$) of the points (from a point set $P$) inside a given query range…
The input to the Multiway Cut problem is a weighted undirected graph, with nonnegative edge weights, and $k$ designated terminals. The goal is to partition the vertices of the graph into $k$ parts, each containing exactly one of the…