Related papers: HINO: a BFO-aligned ontology representing human mo…
There is a large number of online documents data sources available nowadays. The lack of structure and the differences between formats are the main difficulties to automatically extract information from them, which also has a negative…
The connectome, a map of the structural and/or functional connections in the brain, provides a complex representation of the neurobiological phenotypes on which it supervenes. This information-rich data modality has the potential to…
Efficiency and scalability are obstacles that have not yet received a viable response from the human activity recognition research community. This paper proposes an activity recognition method. The knowledge model is in the form of…
The present preprint specifies and defines all Terms, Properties, Relationships and Axioms of ProcessCO (Process Core Ontology). ProcessCO is an ontology devoted mainly for Work Entities and related terms, which is placed at the core level…
ANIMO (Analysis of Networks with Interactive MOdeling) is a software for modeling biological networks, such as e.g. signaling, metabolic or gene networks. An ANIMO model is essentially the sum of a network topology and a number of…
Interaction nets are a graphical model of computation, which has been used to define efficient evaluators for functional calculi, and specifically lambda calculi with patterns. However, the flat structure of interaction nets forces pattern…
The Balanced-Pairwise-Affinities (BPA) feature transform is designed to upgrade the features of a set of input items to facilitate downstream matching or grouping related tasks. The transformed set encodes a rich representation of high…
We present POTATO, a task- and languageindependent framework for human-in-the-loop (HITL) learning of rule-based text classifiers using graph-based features. POTATO handles any type of directed graph and supports parsing text into Abstract…
This research on data extraction methods applies recent advances in natural language processing to evidence synthesis based on medical texts. Texts of interest include abstracts of clinical trials in English and in multilingual contexts.…
A large number of protein sequences are becoming available through the application of novel high-throughput sequencing technologies. Experimental functional characterization of these proteins is time-consuming and expensive, and is often…
Numerous real-world information networks form Heterogeneous Information Networks (HINs) with diverse objects and relations represented as nodes and edges in heterogeneous graphs. Similarity between nodes quantifies how closely two nodes…
Integration of transcriptomic and metabolomic data improves functional interpretation of disease-related metabolomic phenotypes, and facilitates discovery of putative metabolite biomarkers and gene targets. For this reason, these data are…
This paper presents a software component that generates a user interface structure for populating a domain ontology. The core of this work is an algorithm that takes an ontology and returns a structure describing the user interface. The…
In this article, we introduce a reference model for interaction semantics among communicating discrete systems to guide the discourse on interoperability. The necessary set of unifying concepts is small and comprises essentially the notion…
Ontology interoperability is one of the complicated issues that restricts the use of ontologies in knowledge graphs (KGs). Different ontologies with conflicting and overlapping concepts make it difficult to design, develop, and deploy an…
Although visual foundation models like DINOv2 provide state-of-the-art performance as feature extractors, their complex, high-dimensional representations create substantial hurdles for interpretability. This work proposes DINO-QPM, which…
Molecular interactions have widely been modelled as networks. The local wiring patterns around molecules in molecular networks are linked with their biological functions. However, networks model only pairwise interactions between molecules…
The network representation is becoming increasingly popular for the description of cardiovascular interactions based on the analysis of multiple simultaneously collected variables. However, the traditional methods to assess network links…
The human proteome contains a vast network of interacting kinases and substrates. Even though some kinases have proven to be immensely useful as therapeutic targets, a majority are still understudied. In this work, we present a novel…
The Internet and the Web are now an integral part of the way most modern societies, and corresponding political systems, work. We regard Political systems as the formal and informal political processes by which decisions are made concerning…