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Diffusion models have demonstrated remarkable performance in generation tasks. Nevertheless, explaining the diffusion process remains challenging due to it being a sequence of denoising noisy images that are difficult for experts to…

Computer Vision and Pattern Recognition · Computer Science 2024-02-19 Ji-Hoon Park , Yeong-Joon Ju , Seong-Whan Lee

From the smallest biological systems to the largest cosmological structures, spatial domains undergo expansion and contraction. Within these growing domains, diffusive transport is a common phenomenon. Mathematical models have been widely…

Populations and Evolution · Quantitative Biology 2023-06-27 Stuart T. Johnston , Matthew J. Simpson

A one-dimensional cellular automaton with a probabilistic evolution rule can generate stochastic surface growth in $(1 + 1)$ dimensions. Two such discrete models of surface growth are constructed from a probabilistic cellular automaton…

Statistical Mechanics · Physics 2015-06-25 Pratip Bhattacharyya

Vascular networks play a key role in the development, function, and survival of many organisms, facilitating transport of nutrients and other critical factors within and between systems. The development of these vessel networks has been…

Tissues and Organs · Quantitative Biology 2022-03-23 Benjamin J. Walker , Adriana T. Dawes

We present a model of decentralized growth for Artificial Neural Networks (ANNs) inspired by the development and the physiology of real nervous systems. In this model, each individual artificial neuron is an autonomous unit whose behavior…

adap-org · Physics 2007-05-23 Jens C. Astor , Christoph Adami

Diffusion models have achieved success in high-fidelity data synthesis, yet their capacity for more complex, structured reasoning like text following tasks remains constrained. While advances in language models have leveraged strategies…

Computer Vision and Pattern Recognition · Computer Science 2026-04-29 Yuwei Sun , Yuxuan Yao , Hui Li , Siyu Zhu

Human brains respond to semantic features of presented stimuli with different neurons. It is then curious whether modern deep neural networks admit a similar behavior pattern. Specifically, this paper finds a small cluster of neurons in a…

Computer Vision and Pattern Recognition · Computer Science 2023-03-10 Zhiheng Liu , Ruili Feng , Kai Zhu , Yifei Zhang , Kecheng Zheng , Yu Liu , Deli Zhao , Jingren Zhou , Yang Cao

Experimental results in recent years have shown that adult neurogenesis is a significant phenomenon in the mammalian brain. Little is known, however, about the functional role played by the generation and destruction of neurons in the…

Neurons and Cognition · Quantitative Biology 2009-11-10 Guillermo A. Cecchi , Marcelo O. Magnasco

Understanding and predicting the progression of neurodegenerative diseases remains a major challenge in medical AI, with significant implications for early diagnosis, disease monitoring, and treatment planning. However, most available…

Computer Vision and Pattern Recognition · Computer Science 2026-04-27 Nivetha Jayakumar , Swakshar Deb , Bahram Jafrasteh , Qingyu Zhao , Miaomiao Zhang

Computational neuroimaging involves analyzing brain images or signals to provide mechanistic insights and predictive tools for human cognition and behavior. While diffusion models have shown stability and high-quality generation in natural…

Computer Vision and Pattern Recognition · Computer Science 2025-02-11 Haokai Zhao , Haowei Lou , Lina Yao , Wei Peng , Ehsan Adeli , Kilian M Pohl , Yu Zhang

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

We develop a general analytical and numerical framework for estimating intra- and extra-neurite water fractions and diffusion coefficients, as well as neurite orientational dispersion, in each imaging voxel. By employing a set of rotational…

Biological Physics · Physics 2018-04-10 Dmitry S. Novikov , Jelle Veraart , Ileana O. Jelescu , Els Fieremans

Domain growth is a key process in many areas of biology, including embryonic development, the growth of tissue, and limb regeneration. As a result, mechanisms for incorporating it into traditional models for cell movement, interaction, and…

Quantitative Methods · Quantitative Biology 2019-12-25 Cameron A. Smith , Cécile Mailler , Christian A. Yates

Despite significant advances in understanding neuronal development, a fully quantitative framework that integrates intracellular mechanisms with environmental cues during axonal growth remains incomplete. Here, we present a unified…

Neurons and Cognition · Quantitative Biology 2025-05-26 Kyle Cheng , Udathari Kumarasinghe , Cristian Staii

We consider the growth of a polymer layer on a flat surface in a good solvent by in-situ polymerization. This is viewed as a modified form of diffusion-limited aggregation without branching. We predict theoretically the formation of a…

Statistical Mechanics · Physics 2009-10-31 J. P. Wittmer , M. E. Cates , A. Johner , M. S. Turner

Using linearized elasticity as a convenient mechanical framework, we show that volumetric growth can be formulated as an optimization-driven process in which the growth tensor is determined implicitly by constrained optimization rather than…

Mathematical Physics · Physics 2026-05-14 Rohan Abeyaratne , Roberto Paroni , Marco Picchi Scardaoni

The processes that determine the establishment of the complex morphology of neurons during development are still poorly understood. We present experiments that use live imaging to examine the role of vesicle transport and propose a…

Subcellular Processes · Quantitative Biology 2019-08-07 Ina Humpert , Danila Di Meo , Andreas W. Püschel , Jan-Frederik Pietschmann

Local anaxonic neurons with graded potential release are important ingredients of nervous systems, present in the olfactory bulb system of mammalians, in the human visual system, as well as in arthropods and nematodes. We develop a neuronal…

Neurons and Cognition · Quantitative Biology 2021-04-14 M. Rahimi-Majd , M. A. Seifi , L. de Arcangelis , M. N. Najafi

Over the last few years, Neural Processes have become a useful modelling tool in many application areas, such as healthcare and climate sciences, in which data are scarce and prediction uncertainty estimates are indispensable. However, the…

Machine Learning · Computer Science 2023-11-17 Lorenzo Bonito , James Requeima , Aliaksandra Shysheya , Richard E. Turner

In contrast to conventional artificial neural networks, which are structurally static, we present two approaches for evolving small networks into larger ones during training. The first method employs an auxiliary weight that directly…

Machine Learning · Computer Science 2025-07-29 Anil Radhakrishnan , John F. Lindner , Scott T. Miller , Sudeshna Sinha , William L. Ditto