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In exponentially proliferating populations of microbes, the population typically doubles at a rate less than the average doubling time of a single-cell due to variability at the single-cell level. It is known that the distribution of…

Populations and Evolution · Quantitative Biology 2020-07-29 Ethan Levien , Trevor GrandPre , Ariel Amir

Patterns and forms adopted by Nature, such as the shape of living cells, the geometry of shells and the branched structure of plants, are often the result of simple dynamical paradigms. Here we show that a growing self-interacting string…

Soft Condensed Matter · Physics 2009-11-11 D. Marenduzzo , T. X. Hoang , F. Seno , M. Vendruscolo , A. Maritan

We present a simple physical model that recapitulates several features of biological evolution, while being based only on thermally-driven attachment and detachment of elementary building blocks. Through its dynamics, this model samples a…

Populations and Evolution · Quantitative Biology 2025-07-11 Guy Bunin , Olivier Rivoire

Conventional grain growth is rate-limited by the mobility of grain boundary. To describe similar phenomena limited by the mobility of other grain junctions, we have developed a general theory allowing for size-dependent mobility and its…

Materials Science · Physics 2017-08-16 Yanhao Dong , I-Wei Chen

Pollen grains are known for their impressive variety of species-specific, microscale surface patterning. Despite having similar biological developmental steps, pollen grain surface features are remarkably geometrically varied. Previous work…

Soft Condensed Matter · Physics 2019-02-15 Asja Radja , Eric M. Horsley , Maxim O. Lavrentovich , Alison M. Sweeney

The size distribution of grains is a fundamental characteristic of polycrystalline solids. In the absence of deformation, the grain-size distribution is controlled by normal grain growth. The canonical model of normal grain growth,…

Materials Science · Physics 2021-02-04 Thomas Breithaupt , Lars N. Hansen , Srikanth Toppaladoddi , Richard F. Katz

We propose a semiparametric model for autonomous nonlinear dynamical systems and devise an estimation procedure for model fitting. This model incorporates subject-specific effects and can be viewed as a nonlinear semiparametric mixed…

Applications · Statistics 2011-12-01 Debashis Paul , Jie Peng , Prabir Burman

We consider a branching particle system where each particle moves as an independent Brownian motion and breeds at a rate proportional to its distance from the origin raised to the power $p$, for $p\in[0,2)$. The asymptotic behaviour of the…

Probability · Mathematics 2014-02-24 Julien Berestycki , Éric Brunet , John W. Harris , Simon C. Harris , Matthew I. Roberts

An ongoing debate in evolutionary biology is whether phenotypic change occurs predominantly around the time of speciation or whether it instead accumulates gradually over time. In this work I propose a general framework incorporating both…

Populations and Evolution · Quantitative Biology 2014-07-02 Krzysztof Bartoszek

A symmetric version of the well-known SPM model for sandpiles is introduced. We prove that the new model has fixed point dynamics. Although there might be several fixed points, a precise description of the fixed points is given. Moreover,…

Computational Complexity · Computer Science 2016-08-16 Enrico Formenti , Benoît Masson , Theophilos Pisokas

We briefly review the properties of radially growing interfaces and their connection to biological growth. We focus on simplified models which result from the abstraction of only considering domain growth and not the interface curvature.…

Statistical Mechanics · Physics 2011-10-04 Carlos Escudero

We propose a method for finding metabolic parameters of cells, organs and whole organisms, which is based on the earlier discovered general growth law. Based on the obtained results and analysis of available biological models, we propose a…

Tissues and Organs · Quantitative Biology 2015-09-14 Yuri K. Shestopaloff

In this communication, the approach of phenomenological universalities of growth are considered to describe the behaviour of a system showing oscillatory growth. Two phenomenological classes are proposed to consider the behaviour of a…

Chaotic Dynamics · Physics 2015-07-20 Dibyendu Biswas , Swarup Poria , Sankar Nayaran Patra

Biological systems are modular, and this modularity evolves over time and in different environments. A number of observations have been made of increased modularity in biological systems under increased environmental pressure. We here…

Populations and Evolution · Quantitative Biology 2015-01-07 Jeong-Man Park , Liang Ren Niestemski , Michael W. Deem

Conformal mapping models are used to study competition of noise and anisotropy in Laplacian growth. For that, a new family of models is introduced with the noise level and directional anisotropy controlled independently. Fractalization is…

Statistical Mechanics · Physics 2008-04-12 M. G. Stepanov , L. S. Levitov

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

Populations and Evolution · Quantitative Biology 2009-11-13 Jun Sun , Michael W. Deem

One of the major characteristics of living organisms is metabolic rate, which is the amount of energy produced per unit of time. When the mass of organisms increases, the metabolic rate also increases (usually as a power function of mass),…

Other Quantitative Biology · Quantitative Biology 2024-12-02 Yuri K. Shestopaloff

In this paper, we define a class of additive random growth models whose growth is at least and at most linear and prove an asymptotic shape theorem for these models. This proof generalizes already known proofs for the classical contact…

Probability · Mathematics 2025-11-04 Aurelia Deshayes , Pierrick Siest

Bacteria populate the colon where they replicate and migrate in response to nutrient availability. Here I model the colon bacterial population as a sandpile model, the colon-pile. Sand addition mimics bacterial replication and grains…

Populations and Evolution · Quantitative Biology 2020-03-09 Alexei Vazquez

In the past many papers have appeared which simulated surface growth with different growth models. The results showed that, if models differed only slightly in their `growth' rules, the resulting surfaces may belong to different…

Computational Physics · Physics 2009-10-31 W. E. Hagston , H. Ketterl
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