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A simple model of macroevolution is proposed exhibiting both the property of punctuated equilibrium and the dynamics of potentialities for different species to evolve towards increasingly higher complexity. It is based on the phenomenon of…

Biological Physics · Physics 2007-05-23 Siegfried Fussy , Gerhard Groessing , Herbert Schwabl

The adoption of agroecological practices will be crucial to address the challenges of climate change and biodiversity loss. Such practices favor the cultivation of plants in complex mixtures with layouts differing from the monoculture…

Populations and Evolution · Quantitative Biology 2024-09-26 Julian Talbot , Pascal Viot , David Colliaux

Measures of biodiversity change such as the Living Planet Index describe proportional change in the abundance of a typical species, which can be thought of as change in the size of a community. Here, I discuss the orthogonal concept of…

Populations and Evolution · Quantitative Biology 2014-09-25 Matthew Spencer

In exponential population growth, variability in the timing of individual division events and environmental factors (including stochastic inoculation) compound to produce variable growth trajectories. In several stochastic models of…

Populations and Evolution · Quantitative Biology 2023-12-25 Eric W. Jones , Joshua Derrick , Roger M. Nisbet , Will Ludington , David A. Sivak

A general theory of thermodynamically consistent biomechanical--biochemical growth in a body, considering mass addition in the bulk and at an incoherent interface, is developed. The incoherency arises due to incompatibility of growth and…

Biological Physics · Physics 2018-02-07 Digendranath Swain , Anurag Gupta

We investigate the nature of genetic drift acting at the leading edge of range expansions, building on recent results in [Hallatschek et al., Proc.\ Natl.\ Acad.\ Sci., \textbf{104}(50): 19926 - 19930 (2007)]. A well mixed population of two…

Populations and Evolution · Quantitative Biology 2010-08-16 Adnan Ali , Stefan Grosskinsky

The Abelian sandpile model was the first example of a self-organized critical system studied by Bak, Tang and Wiesenfeld. The dynamics of the sandpiles occur when the grains topple over a graph. In this study, we allow the graph to evolve…

Combinatorics · Mathematics 2024-07-24 Carlos A. Alfaro , Juan Pablo Serrano , Ralihe R. Villagrán

In a growth-fragmentation system, cells grow in size slowly and split apart at random. Typically, the number of cells in the system grows exponentially and the distribution of the sizes of cells settles into an equilibrium 'asymptotic…

Probability · Mathematics 2025-01-22 Denis Villemonais , Alexander Watson

We insert some asymmetries in the continuous Abelian sandpile models, such as directedness and ellipticity. We analyze probability distribution of different heights and also find the field theory corresponding to the models. Also we find…

Statistical Mechanics · Physics 2009-11-13 N. Azimi-Tafreshi , H. Dashti-Naserabadi , S. Moghimi-Araghi

We introduce a new model of evolution on a fitness landscape possessing a tunable degree of neutrality. The model allows us to study the general properties of molecular species undergoing neutral evolution. We find that a number of…

adap-org · Physics 2007-05-23 M. E. J. Newman , Robin Engelhardt

The properties of interstellar grains can now be defined by a rapidly growing wealth of observational data. We rely upon models to combine these data with unobserved properties such as the size distribution of grains, their structure and…

Astrophysics · Physics 2007-05-23 Adolf N. Witt

We developed a grain growth model that is based on the energy minimisation of surfaces with respect to the volume energy and the grain's environment. We used the well-known FePt L1$_\text{0}$ system to discover the physical factors that…

Materials Science · Physics 2022-09-14 Connor Skelland , Gino Hrkac

Most conspicuous organisms are multicellular and most multicellular organisms develop somatic cells to perform specific, non-reproductive tasks. The ubiquity of this division of labor suggests that it is highly advantageous. In this paper,…

Populations and Evolution · Quantitative Biology 2008-01-18 Martin Willensdorfer

The growth of bacterial flagellar filaments is a self-assembly process where flagellin molecules are transported through the narrow core of the flagellum and are added at the distal end. To model this situation, we generalize a growth…

Biological Physics · Physics 2015-12-18 Maximilian Schmitt , Holger Stark

We investigate the evolutionary dynamics of an idealised model for the robust self-assembly of two-dimensional structures called polyominoes. The model includes rules that encode interactions between sets of square tiles that drive the…

Populations and Evolution · Quantitative Biology 2013-09-03 Iain G. Johnston , Sebastian A. Ahnert , Jonathan P. K. Doye , Ard A. Louis

Vegetation patterns, a natural phenomenon observed worldwide, are typically driven by spatially distributed feedback. However, the spatial colonization mechanisms of clonal plants, driven by the growth of a rhizome, are usually not…

Populations and Evolution · Quantitative Biology 2020-07-01 Daniel Ruiz-Reynés , Francesca Schönsberg , Emilio Hernández-García , Damià Gomila

We investigate general properties of non-deterministic self-assembly with asymmetric interactions, using a computational model and DNA tile assembly experiments. By contrasting symmetric and asymmetric interactions we show that the latter…

Soft Condensed Matter · Physics 2016-08-24 S. Tesoro , K. Göpfrich , T. Kartanas , U. F. Keyser , S. E. Ahnert

With a toppling rule which generates metastable sites, we explore the properties of a gradient-driven sandpile that is minimally perturbed at one boundary. In two dimensions we find that the transport of grains takes place along deep…

Statistical Mechanics · Physics 2009-11-07 Lucian Anton , Hendrik B. Geyer

The paper develops one-parametric family of the sand-piles dealing with the grains' local losses on the fixed amount. The family exhibits the crossover between the models with deterministic and stochastic relaxation. The mean height of the…

Statistical Mechanics · Physics 2009-11-11 A. B. Shapoval , M. G. Shnirman

SPM (Sand Pile Model) is a simple discrete dynamical system used in physics to represent granular objects. It is deeply related to integer partitions, and many other combinatorics problems, such as tilings or rewriting systems. The…

Discrete Mathematics · Computer Science 2019-06-14 M. Latapy , R. Mantaci , M. Morvan , H. D. Phan
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