Related papers: A Model of Colonic Crypts using SBML Spatial
In this article, we develop and investigate a new classifier based on features extracted using spatial depth. Our construction is based on fitting a generalized additive model to the posterior probabilities of the different competing…
This study aims at finding a method for constructing molecular dynamics like models using the formalism of cellular automata for fast simulation of fluid dynamic systems (including compressible phenomena). In as much as the results…
Declarative spatial reasoning denotes the ability to (declaratively) specify and solve real-world problems related to geometric and qualitative spatial representation and reasoning within standard knowledge representation and reasoning (KR)…
We present a new cosmological model that mimics the Lambda Cold Dark Matter by using a stealth field. This kind of field is characterized as not coupling directly to gravity; however, it is connected to the underlying matter content of the…
Recent robotic task planning frameworks have integrated large multimodal models (LMMs) such as GPT-4o. To address grounding issues of such models, it has been suggested to split the pipeline into perceptional state grounding and subsequent…
This paper offers an expository overview of the field of spatial econometrics. It first justifies the necessity of special statistical procedures for the analysis of spatial data and then proceeds to describe the fundamentals of these…
Semantic image synthesis (SIS) is a task to generate realistic images corresponding to semantic maps (labels). However, in real-world applications, SIS often encounters noisy user inputs. To address this, we propose Stochastic Conditional…
It has been an open question as to whether the Modular Structural Operational Semantics framework can express the dynamic semantics of call/cc. This paper shows that it can, and furthermore, demonstrates that it can express the more general…
Spatial domain identification requires jointly modeling molecular signatures and physical coordinates, yet current tools frequently over-smooth biological boundaries, require user-specified cluster numbers, and lack principled multimodal…
The development of single-cell and spatial transcriptomics has revolutionized our capacity to investigate cellular properties, functions, and interactions in both cellular and spatial contexts. However, the analysis of single-cell and…
Spatial patterning is common in ecological systems and has been extensively studied via different modeling approaches. Individual-based models (IBMs) accurately describe nonlinear interactions at the organism level and the stochastic…
A high-performance image compression algorithm is crucial for real-time information transmission across numerous fields. Despite rapid progress in image compression, computational inefficiency and poor redundancy modeling still pose…
Score-based generative modelling (SGM) has proven to be a very effective method for modelling densities on finite-dimensional spaces. In this work we propose to extend this methodology to learn generative models over functional spaces. To…
Soil is a complex, dynamic material, with physical properties that depend on its biological content. We propose a cellular automaton model for self-organizing soil structure, where soil aggregates and serves as food for microbial species.…
We present a mathematical programming-based method for model predictive control of cyber-physical systems subject to signal temporal logic (STL) specifications. We describe the use of STL to specify a wide range of properties of these…
We study evolution of cosmological models filled with the scalar field and barotropic matter. We consider the scalar field minimally and non-minimally coupled to gravity. We demonstrated the growth of degree of complexity of evolutional…
The notion of cellular stratified spaces was introduced in a joint work of the author with Basabe, Gonz{\'a}lez, and Rudyak with the aim of constructing a cellular model of the configuration space of a sphere. Although the original aim was…
A general precedure is outlined for an algorithmic implementation of the strong coupling expansion of lattice chiral models on arbitrary lattices. A symbolic character expansion in terms of connected values of group integrals on skeleton…
We implement a novel representation of model search spaces as diagrams over a category of models, where we have restricted attention to a broad class of models whose structure is presented by \C-sets. (Co)limits in these diagram categories…
We model a general, hierarchically organized tissue by a multi compartment approach, allowing any number of mutations within a cell. We derive closed solutions for the deterministic clonal dynamics and the reproductive capacity of single…