Related papers: A general method for common intervals
The graph isomorphism (GI) problem is the computational problem of finding a permutation of vertices of a given graph $G_1$ that transforms $G_1$ to another given graph $G_2$ and preserves the adjacency. In this work, we propose a quantum…
The recently introduced problem of extending partial interval representations asks, for an interval graph with some intervals pre-drawn by the input, whether the partial representation can be extended to a representation of the entire…
In a strongly connected graph $G = (V,E)$, a cut arc (also called strong bridge) is an arc $e \in E$ whose removal makes the graph no longer strongly connected. Equivalently, there exist $u,v \in V$, such that all $u$-$v$ walks contain $e$.…
We study distributed algorithms for some fundamental problems in data summarization. Given a communication graph $G$ of $n$ nodes each of which may hold a value initially, we focus on computing $\sum_{i=1}^N g(f_i)$, where $f_i$ is the…
An occurrence of a classical pattern p in a permutation \pi is a subsequence of \pi whose letters are in the same relative order (of size) as those in p. In an occurrence of a generalized pattern, some letters of that subsequence may be…
We present a data structure called a history graph that offers a practical basis for the analysis of genome evolution. It conceptually simplifies the study of parsimonious evolutionary histories by representing both substitutions and double…
Various algorithms have been proposed to enumerate all connected induced subgraphs of a graph $G=(V,E)$. As a variation we enumerate all "packings of connected sets", i.e. partitions $\Pi$ of $V$ with the property that each part of $\Pi$…
For two strings u, v over some alphabet A, we investigate the problem of embedding u into w as a subsequence under the presence of generalised gap constraints. A generalised gap constraint is a triple (i, j, C_{i, j}), where 1 <= i < j <=…
Inferring connectivity in neuronal networks remains a key challenge in statistical neuroscience. The `common input' problem presents the major roadblock: it is difficult to reliably distinguish causal connections between pairs of observed…
The status of a vertex $x$ in a graph is the sum of the distances between $x$ and all other vertices. Let $G$ be a connected graph. The status sequence of $G$ is the list of the statuses of all vertices arranged in nondecreasing order. $G$…
We investigate a special case of the Induced Subgraph Isomorphism problem, where both input graphs are interval graphs. We show the NP-hardness of this problem, and we prove fixed-parameter tractability of the problem with non-standard…
Recently, Lafond and Luo [MFCS 2023] defined the $\mathcal{G}$-modular cardinality of a graph $G$ as the minimum size of a partition of $V(G)$ into modules that belong to a graph class $\mathcal{G}$. We analyze the complexity of calculating…
The \emph{thinness} of a graph is a width parameter that generalizes some properties of interval graphs, which are exactly the graphs of thinness one. Graphs with thinness at most two include, for example, bipartite convex graphs. Many…
Subgraph enumeration problems ask to output all subgraphs of an input graph that belongs to the specified graph class or satisfy the given constraint. These problems have been widely studied in theoretical computer science. As far, many…
Graphs are used in many disciplines to model the relationships that exist between objects in a complex discrete system. Researchers may wish to compare a network of interest to a "typical" graph from a family (or ensemble) of graphs which…
Consider a random graph $G$ of size $N$ constructed according to a \textit{graphon} $w \, : \, [0,1]^{2} \mapsto [0,1]$ as follows. First embed $N$ vertices $V = \{v_1, v_2, \ldots, v_N\}$ into the interval $[0,1]$, then for each $i < j$…
The vertices of an interval graph represent intervals over a real line where overlapping intervals denote that their corresponding vertices are adjacent. This implies that the vertices are measurable by a metric and there exists a linear…
We propose a novel way of generalizing the class of interval graphs, via a graph width parameter called the simultaneous interval number. This parameter is related to the simultaneous representation problem for interval graphs and defined…
Vertex splitting is a graph modification operation in which a vertex is replaced by multiple vertices such that the union of their neighborhoods equals the neighborhood of the original vertex. We introduce and study vertex splitting as a…
Many algorithms and applications involve repeatedly solving variations of the same inference problem; for example we may want to introduce new evidence to the model or perform updates to conditional dependencies. The goal of adaptive…