Related papers: A general method for common intervals
Intersection graphs of geometric objects have been extensively studied, both due to their interesting structure and their numerous applications; prominent examples include interval graphs and permutation graphs. In this paper we study a…
Interval graphs were used in the study of genomics by the famous molecular biologist Benzer. Later on probe interval graphs were introduced by Zhang as a generalization of interval graphs for the study of cosmid contig mapping of DNA. A…
The classic string indexing problem is to preprocess a string S into a compact data structure that supports efficient pattern matching queries. Typical queries include existential queries (decide if the pattern occurs in S), reporting…
We consider undirected simple finite graphs. The sets of vertices and edges of a graph $G$ are denoted by $V(G)$ and $E(G)$, respectively. For a graph $G$, we denote by $\delta(G)$ and $\eta(G)$ the least degree of a vertex of $G$ and the…
We study graph classes modeled by families of non-crossing (NC) connected sets. Two classic graph classes in this context are disk graphs and proper interval graphs. We focus on the cases when the sets are paths and the host is a tree…
In the recent research of data mining, frequent structures in a sequence of graphs have been studied intensively, and one of the main concern is changing structures along a sequence of graphs that can capture dynamic properties of data. On…
Perfect sorting by reversals, a problem originating in computational genomics, is the process of sorting a signed permutation to either the identity or to the reversed identity permutation, by a sequence of reversals that do not break any…
When each vertex is assigned a set, the intersection graph generated by the sets is the graph in which two distinct vertices are joined by an edge if and only if their assigned sets have a nonempty intersection. An interval graph is an…
We consider the problems of finding optimal identifying codes, (open) locating-dominating sets and resolving sets of an interval or a permutation graph. In these problems, one asks to find a subset of vertices, normally called a…
In this paper, we are interested in algorithms that take in input an arbitrary graph $G$, and that enumerate in output all the (inclusion-wise) maximal "subgraphs" of $G$ which fulfil a given property $\Pi$. All over this paper, we study…
In this paper, we revisit a well-known distributed projected subgradient algorithm which aims to minimize a sum of cost functions with a common set constraint. In contrast to most of existing results, weight matrices of the time-varying…
For a given set of intervals on the real line, we consider the problem of ordering the intervals with the goal of minimizing an objective function that depends on the exposed interval pieces (that is, the pieces that are not covered by…
Let $G$ be a nontrivial connected graph of order $n$ and let $k$ be an integer with $2\leq k\leq n$. For a set $S$ of $k$ vertices of $G$, let $\kappa (S)$ denote the maximum number $\ell$ of edge-disjoint trees $T_1,T_2,...,T_\ell$ in $G$…
Problems related to finding induced subgraphs satisfying given properties form one of the most studied areas within graph algorithms. Such problems have given rise to breakthrough results and led to development of new techniques both within…
We propose a new family of combinatorial inference problems for graphical models. Unlike classical statistical inference where the main interest is point estimation or parameter testing, combinatorial inference aims at testing the global…
We consider the problem of classifying graphs using graph kernels. We define a new graph kernel, called the generalized shortest path kernel, based on the number and length of shortest paths between nodes. For our example classification…
Representing patterns as labeled graphs is becoming increasingly common in the broad field of computational intelligence. Accordingly, a wide repertoire of pattern recognition tools, such as classifiers and knowledge discovery procedures,…
A graph $G$ with vertex set $\{v_1,v_2,\ldots,v_n\}$ is an intersection graph of segments if there are segments $s_1,\ldots,s_n$ in the plane such that $s_i$ and $s_j$ have a common point if and only if $\{v_i,v_j\}$ is an edge of~$G$. In…
A hypergraph $(V,E)$ is called an interval hypergraph if there exists a linear order $l$ on $V$ such that every edge $e\in E$ is an interval w.r.t. $l$; we also assume that $\{j\}\in E$ for every $j\in V$. Our main result is a de…
The graph isomorphism (GI) problem, which asks whether two graphs are structurally identical, occupies a unique position in computational complexity -- it is neither known to be solvable in polynomial time, nor proven to be NP-complete. We…