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Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial…

Populations and Evolution · Quantitative Biology 2017-04-20 Camille Coron , Manon Costa , Hélène Leman , Charline Smadi

When biological populations expand into new territory, the evolutionary outcomes can be strongly influenced by genetic drift, the random fluctuations in allele frequencies. Meanwhile, spatial variability in the environment can also…

Populations and Evolution · Quantitative Biology 2024-06-27 Jimmy Gonzalez Nuñez , Jayson Paulose , Wolfram Möbius , Daniel A. Beller

We consider the dynamics imposed by natural selection on the populations of two competing, sexually reproducing, haploid species. In this setting, the fitness of any genome varies over time due to the changing population mix of the…

Populations and Evolution · Quantitative Biology 2024-07-18 Yuval Rabani , Leonard J. Schulman , Alistair Sinclair

When long-lived, balancing selection can lead to trans-species polymorphisms that are shared by two or more species identical by descent. In this case, the gene genealogies at the selected sites cluster by allele instead of by species and,…

Populations and Evolution · Quantitative Biology 2014-01-30 Ziyue Gao , Molly Przeworski , Guy Sella

In the absence of selection, the structure of allelic diversity is described by the elegant sampling formula of Ewens. This formula has helped shape our expectations of empirical patterns of molecular variation. Along with coalescent…

Populations and Evolution · Quantitative Biology 2011-05-30 Michael M. Desai , Lauren E. Nicolaisen , Aleksandra M. Walczak , Joshua B. Plotkin

Stable mixtures of cooperators and defectors are often seen in nature. This fact is at odds with predictions based on linear public goods games under weak selection. That model implies fixation either of cooperators or of defectors, and the…

Populations and Evolution · Quantitative Biology 2012-11-15 Roberto H. Schonmann , Renato Vicente , Robert Boyd

We study a class of evolution models, where the breeding process involves an arbitrary exchangeable process, allowing for mutations to appear. The population size $n$ is fixed, hence after breeding, selection is applied. Individuals are…

Probability · Mathematics 2022-05-03 Daniela Bertacchi , Juri Lember , Fabio Zucca

We study the large population limit of a stochastic individual-based model which describes the time evolution of a diploid hermaphroditic population reproducing according to Mendelian rules. In [Neukirch, Bovier, 2016] it is proved that…

Probability · Mathematics 2018-01-23 Anton Bovier , Loren Coquille , Rebecca Neukirch

Recent theoretical studies have shown that demographic stochasticity can greatly increase the tendency of asexually reproducing phenotypically diverse organisms to spontaneously evolve into localised clusters, suggesting a simple mechanism…

Populations and Evolution · Quantitative Biology 2016-03-23 Luis F. Lafuerza , Alan J. McKane

Species sharing a prey or a predator species may go extinct due to exploitative or apparent competition. We examine whether evolution of the shared species acts as a coexistence mechanism and to what extent the answer depends on the genetic…

Populations and Evolution · Quantitative Biology 2019-02-12 Sebastian J. Schreiber , Swati Patel , Casey terHorst

One of the most challenging issues of evolutionary biology concerns speciation, the emergence of new species from an initial one. The huge amount of species found in nature demands a simple and robust mechanism. Yet, no consensus has been…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Catarina R. Almeida , Fernão Vistulo de Abreu

The contribution to an organism's phenotype from one genetic locus may depend upon the status of other loci. Such epistatic interactions among loci are now recognized as fundamental to shaping the process of adaptation in evolving…

Populations and Evolution · Quantitative Biology 2012-12-18 Jeremy A. Draghi , Joshua B. Plotkin

Most of the DNA that composes a complex organism is non-coding and defined as junk. Even the coding part is composed of genes that affect the phenotype differently. Therefore, a random mutation has an effect on the specimen fitness that…

Populations and Evolution · Quantitative Biology 2021-07-19 Mattia Miotto , Lorenzo Monacelli

A phenomenon that strongly influences the demography of small introduced populations and thereby potentially their genetic diversity is the Allee effect, a reduction in population growth rates at small population sizes. We take a stochastic…

Populations and Evolution · Quantitative Biology 2013-11-25 Meike J. Wittmann , Wilfried Gabriel , Dirk Metzler

We investigate the impact of Allee effect and dispersal on the long-term evolution of a population in a patchy environment, focusing on whether a population already established in one patch either successfully invades an adjacent empty…

Classical Analysis and ODEs · Mathematics 2010-03-02 Yun Kang , Nicolas Lanchier

Evolution occurs in populations of reproducing individuals. The structure of a biological population affects which traits evolve. Understanding evolutionary game dynamics in structured populations is difficult. Precise results have been…

Populations and Evolution · Quantitative Biology 2017-08-16 Benjamin Allen , Gabor Lippner , Yu-Ting Chen , Babak Fotouhi , Naghmeh Momeni , Martin A. Nowak , Shing-Tung Yau

The mapping between genotype and phenotype is encoded in the complex web of epistatic interaction between genetic loci. In this rugged fitness landscape, recombination processes, which tend to increase variation in the population, compete…

Statistical Mechanics · Physics 2015-05-18 Ginestra Bianconi , Olaf Rotzschke

A forward diffusion equation describing the evolution of the allele frequency spectrum is presented. The influx of mutations is accounted for by imposing a suitable boundary condition. For a Wright-Fisher diffusion with or without selection…

Populations and Evolution · Quantitative Biology 2007-05-23 Steven N. Evans , Yelena Shvets , Montgomery Slatkin

The establishment and spreading of biological populations depends crucially on population growth at low densities. The Allee effect is a problem in those populations where the per-capita growth rate at low densities is reduced. We examine…

Statistical Mechanics · Physics 2011-04-12 Michael T. Gastner , Beata Oborny , Alexey B. Ryabov , Bernd Blasius

Using a bit string model, we show that asexual reproduction for diploids is more efficient than for haploids: it improves genetic material producing new individuals with less deleterious mutations. We also see that in a system where…

Statistical Mechanics · Physics 2009-11-07 Armando Ticona , Paulo Murilo C. de Oliveira
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