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Based on extensive study of a dynamical systems model of the development of a cell society, a novel theory for stem cell differentiation and its regulation is proposed as the ``chaos hypothesis''. Two fundamental features of stem cell…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Chikara Furusawa , Kunihiko Kaneko

The propagation of unstable interfaces is at the origin of remarkable patterns that are observed in various areas of science as chemical reactions, phase transitions, growth of bacterial colonies. Since a scalar equation generates usually…

Analysis of PDEs · Mathematics 2014-01-31 Michal Kolwalczyk , Benoit Perthame , Nicolas Vauchelet

Our recent development of a novel research burner has made it possible to experimentally investigate truly unstretched and planar diffusion flames. Hence it has become feasible to directly validate theoretical models for thermal-diffusive…

Fluid Dynamics · Physics 2025-04-09 Etienne Robert , Peter A. Monkewitz

The reaction-diffusion processes in a growing domain involves a dilution term that modifies the properties of the homogeneous state that, in contrast to a fixed domain, depends on time. We study how the dilution term changes the steady…

Pattern Formation and Solitons · Physics 2023-08-24 Aldo Ledesma-Durán

Reaction diffusion systems are often used to study pattern formation in biological systems. However, most methods for understanding their behavior are challenging and can rarely be applied to complex systems common in biological…

Analysis of PDEs · Mathematics 2013-05-24 William R. Holmes

Reactive Rayleigh-Taylor systems are characterized by the competition between the growth of the instability and the rate of reaction between cold (heavy) and hot (light) phases. We present results from state-of-the-art numerical simulations…

Fluid Dynamics · Physics 2011-02-14 A. Scagliarini , L. Biferale , F. Mantovani , M. Sbragaglia , F. Toschi , R. Tripiccione

We consider a reaction-diffusion system undergoing Turing instability and augment it by an additional unilateral source term. We investigate its influence on the Turing instability and on the character of resulting patterns. The nonsmooth…

Pattern Formation and Solitons · Physics 2017-08-30 Tomas Vejchodsky , Filip Jaros , Milan Kucera , Vojtech Rybar

We are surrounded by spatio-temporal patterns resulting from the interaction of the numerous basic units constituting natural or human-made systems. In presence of diffusive-like coupling, Turing theory has been largely applied to explain…

Pattern Formation and Solitons · Physics 2025-09-15 Marie Dorchain , S. Nirmala Jenifer , Timoteo Carletti

Confirming Turing's theory of morphogens in developmental processes is challenging, and synthetic biology has opened new avenues for testing Turing's predictions. Synthetic mammalian pattern formation has been recently achieved through a…

Pattern Formation and Solitons · Physics 2025-09-22 Mohamed Amine Ouchdiri , Saad Benjelloun , Adnane Saoud , Irene Otero-Muras

This work focuses on dynamics arising from reaction-diffusion equations , where the profile of propagation is no longer characterized by a single front, but by a layer of several fronts which we call a propagating terrace. This means,…

Analysis of PDEs · Mathematics 2019-06-05 Thomas Giletti , Hiroshi Matano

The question of biological stability (permanence) of a replicator reaction-diffusion system is considered. Sufficient conditions of biological stability are found. It is proved that there are situations when biologically unstable…

Populations and Evolution · Quantitative Biology 2014-06-24 Alexander S. Bratus , Artem S. Novozhilov , Vladimir P. Posvyanskii

A ternary reaction-diffusion model for early HIV infection dynamics, incorporating logistic growth of target cells, is introduced. According to in vitro and in vivo studies, random movement of target cells, infected cells, and virions and a…

Populations and Evolution · Quantitative Biology 2024-10-21 Florinda Capone , Roberta De Luca , Vincenzo Luongo

We develop a general classification of the nature of the instabilities yielding spatial organization in open nonideal reaction-diffusion systems, based on linear stability analysis. This encompasses dynamics where chemical species diffuse,…

Statistical Mechanics · Physics 2023-10-05 Timur Aslyamov , Francesco Avanzini , Étienne Fodor , Massimiliano Esposito

A general system of several ordinary differential equations coupled with a reaction-diffusion equation in a bounded domain with zero-flux boundary condition is studied in the context of pattern formation. These initial-boundary value…

Analysis of PDEs · Mathematics 2021-10-29 Szymon Cygan , Anna Marciniak-Czochra , Grzegorz Karch , Kanako Suzuki

Analytically tracking patterns emerging from a small amplitude Turing instability to large amplitude remains a challenge as no general theory exists. In this paper, we consider a three component reaction-diffusion system with one of its…

Dynamical Systems · Mathematics 2023-11-06 Christopher Brown , Gianne Derks , Peter van Heijster , David J. B. Lloyd

In their way to/from turbulence, plane wall-bounded flows display an interesting transitional regime where laminar and turbulent oblique bands alternate, the origin of which is still mysterious. In line with Barkley's recent work about the…

Fluid Dynamics · Physics 2015-06-05 Paul Manneville

It has been argued that there is biological and modeling evidence that a non-linear diffusion coefficient of the type D(b) = D_0 b^{k} underlies the formation of a number of growth patterns of bacterial colonies. We study a…

Statistical Mechanics · Physics 2016-08-31 J. Mueller , W. van Saarloos

Pattern formation in reaction-diffusion systems is of great importance in surface micro-patterning [Grzybowski et al. Soft Matter. 1, 114 (2005)], self-organization of cellular micro-organisms [Schulz et al. Annu. Rev. Microbiol. 55, 105…

Soft Condensed Matter · Physics 2015-05-19 S. G. Ayodele , F. Varnik , D. Raabe

To investigate novel aspects of pattern formation in spin systems, we use a mapping between reactive concentrations in a reaction-diffusion system and spin orientations in a dynamic multiple-spin Ising model. While pattern formation in…

Adaptation and Self-Organizing Systems · Physics 2019-10-15 Mélody Merle , Laura Messio , Julien Mozziconacci

In a finite system driven out of equilibrium by a constant external force the thermodynamic uncertainty relation (TUR) bounds the variance of the conjugate current variable by the thermodynamic cost of maintaining the non-equilibrium…

Statistical Mechanics · Physics 2021-08-17 David Hartich , Aljaz Godec
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