Related papers: Acyclic, connected and tree sets
Phylogenetic networks are a generalization of phylogenetic trees that are used to represent non-tree-like evolutionary histories that arise in organisms such as plants and bacteria, or uncertainty in evolutionary histories. An…
Given a graph $G$, we define a filtration of simplicial complexes associated to $G$, $\mathcal{F}_0(G)\subseteq\mathcal{F}_1(G)\subseteq\cdots\subseteq\mathcal{F}_\infty(G)$ where the first complex is the independence complex and the last…
A graph $\Gamma$ labelled by a set $S$ defines a group $G(\Gamma)$ whose generators are the set of labels $S$ and whose relations are all words which can be read on closed paths of this graph. We introduce the notion of aspherical graph and…
Let $F$ be a free non-abelian group. We show that for any group word $w$ the set $w[F]$ of all values of $w$ in $F$ is rational in $F$ if and only if $w[F] = 1$ or $w[F] = F.$ We generalize this to a wide class of free products of groups.
Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…
A rooted acyclic digraph N with labelled leaves displays a tree T when there exists a way to select a unique parent of each hybrid vertex resulting in the tree T. Let Tr(N) denote the set of all trees displayed by the network N. In general,…
Bayesian networks are a widely-used class of probabilistic graphical models capable of representing symmetric conditional independence between variables of interest using the topology of the underlying graph. For categorical variables, they…
We consider directed acyclic {\em sum-networks} with $m$ sources and $n$ terminals where the sources generate symbols from an arbitrary alphabet field $F$, and the terminals need to recover the sum of the sources over $F$. We show that for…
A directed acyclic network is considered where all the terminals need to recover the sum of the symbols generated at all the sources. We call such a network a sum-network. It is shown that there exists a solvably (and linear solvably)…
We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…
The critical group of a graph is a finite abelian group whose order is the number of spanning forests of the graph. For a graph G with a certain reflective symmetry, we generalize a result of Ciucu-Yan-Zhang factorizing the spanning tree…
A finite group with a cyclic normal subgroup N such that G/N is cyclic is said to be metacyclic. A code over a finite field F is a metacyclic code if it is a left ideal in the group algebra FG for G a metacyclic group. Metacyclic codes are…
A tree automatic structure is a structure whose domain can be encoded by a regular tree language such that each relation is recognisable by a finite automaton processing tuples of trees synchronously. Words can be regarded as specific…
Let $G$ be a finite non-cyclic group. The non-cyclic graph $\Gamma_G$ of $G$ is the graph whose vertex set is $G\setminus Cyc(G)$, two distinct vertices being adjacent if they do not generate a cyclic subgroup, where $Cyc(G)=\{a\in G:…
Cross-bifix-free sets are sets of words such that no prefix of any word is a sufix of any other word. In this paper, we introduce a general constructive method for the sets of cross-bifix-free q-ary words of fixed length. It enables us to…
Traditionally, graph algorithms get a single graph as input, and then they should decide if this graph satisfies a certain property $\Phi$. What happens if this question is modified in a way that we get a possibly infinite family of graphs…
The computational complexity of the isomorphism problem for regular trees, regular linear orders, and regular words is analyzed. A tree is regular if it is isomorphic to the prefix order on a regular language. In case regular languages are…
A non-empty set $X$ of vertices of an acyclic digraph is called connected if the underlying undirected graph induced by $X$ is connected and it is called convex if no two vertices of $X$ are connected by a directed path in which some…
We show that the directed labelled Cayley graphs coincide with the rooted deterministic vertex-transitive simple graphs. The Cayley graphs are also the strongly connected deterministic simple graphs of which all vertices have the same cycle…
We demonstrate that when a graph exhibits a specific type of symmetry, it satisfies the Union Closed Conjecture(UCC). Additionally, we show that certain graph classes, such as Cylindrical Grid Graphs and Torus Grid Graphs also satisfy the…